1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGAGGGGGCCAGAATTCTAAAGACAGTTTTCTTGTGAAATTTCTGTTTCTGCTACCATTCTGTGCTTTACTCTTCTGCTGCTATCATTCATTTACAAAGgtcagctatcatggattgatatacttgtccaatctctttgctttaagctaatacagctttatataagtctcataacattgtattttctgcag
species | Glycine max |
transcript | GLYMA19G43630.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTTTACTTTTCTGCTGCTATCATTCA-TTACAAAAG AATCAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAGTEST: gi|58017534|gb|CX704276.1|CX704276
genomic: TGCTTTACTCTTCTGCTGCTATCATTCATTTAC-AAAGgtcagctatc ... ttttctgcagAATCAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAGT
EST: CATTTACAAAG AATCAAGGGTGCTTCAGTACAC-TTGCAGAAGCTCACTATGTGATCAAGTCEST: gi|58021467|gb|CX708208.1|CX708208
genomic: CATTTACAAAGgtcagctatc ... ttttctgcagAATCAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAGTC
EST: GCTATCATTCATTTAC-AAG -ATNCCAAGGGTACTTCAGTACAC-TTGCAGAAGCTCACTATGTGATCAAGEST: gi|254340000|gb|GR858125.1|GR858125
genomic: GCTATCATTCATTTACAAAGgtcagctatc ... ttttctgcagAAT--CAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAG
EST: TGCTACCATTCTGTGCTTTACTCTTCTGCTGCTATCATTCATTTACAAAG AATCAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAGTC
genomic: TGCTACCATTCTGTGCTTTACTCTTCTGCTGCTATCATTCATTTACAAAGgtcagctatc ... ttttctgcagAATCAAGGGTACTTCAGTACACTTTGCAGAAGCTCACTATGTGATCAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGGGGGCCAGAATTCTAAAGACAGTTTTCTTGTGAAATTTCTGTTTCTGCTACCATTCTGTGCTTTACTCTTCTGCTGCTATCATTCATTTACAAAGgtcagctatcatggattgatatacttgtccaatctctttgctttaagctaatacagctttatataagtctcataacattgtattttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT