Sequence
atgc intronic sequence ATGC exonic sequenceTACTGTTACCATACAAGAAGCAAGAGGTGTTCCTGGGGAGATGACAGTTGAAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaattctgatcttggttttttaatcaatttaaaaacttttcaatccttaagatgctgcatgccttttaaatattttttcaactgtagttaaacttgttt...
Basic information
species | Glycine max |
transcript | GLYMA19G43540.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G43540.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g42900.1 (Oryza sativa), 5'ss of exon 6
TACTGTTACCATACAAGAAGCAAGAGGTGTTCCTGGGGAGATGACAGTTGAAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgta-attctgat-cttggttttttaatcaat-ttaaaaacttttcaatcct----taagatgctgcatgcct--tttaaatattttttcaactgtagttaaacttgttt
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AACAGTAACTATTCAGGAAAGCAGAGGTGCACCTGGGGAGATGACAGTTGAGATAATTGGTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGgtatattttcttgcatgctattctgttccttacttgtatttgtattgtcctatgttctgcttctgcatgcttcatttcattgtttttttcccttttttca---------
upper sequence: GLYMA19G43540.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0081g00440.t01 (Vitis vinifera), 5'ss of exon 7
TACTGTTACCATACAAGAAGCAAGAGGTGTTCCTGGGGAGATGACAGTTGAAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaattctgatcttggtttttta-atcaatttaaaaacttttcaatccttaagatgctgcatgccttttaaatattttttcaactgtagttaaacttgttt
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AACTGTTACCATACAGGAAACAAGGGGTGTTCCTGGGGAAATGACTGTTGAGATTAATGGAACTGCTTCCCAAGTCCAAGCAGCTCAGCAACTGATACAGgcactcttcctccctgtttttgataccaagttgttggtttgtctttgctaatattgcagt-ttccatttgcataatgacattgcttaacattagatcattgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151408799|gb|EV278607.1|EV278607EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaattctga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACTGTTACCATACAAGAAGCAAGAGGTGTTCCTGGGGAGATGACAGTTGAAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaattctgatcttggttttttaatcaatttaaaaacttttcaatccttaagatgctgcatgccttttaaatattttttcaactgtagttaaacttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA