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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTTGTTGAGCTGgtaatctcagtcttatctatagctctactactgtgtatgttgcttgacctttgtgagggcttttctgtttgcaaatttgtttaagcagtgtttttttttttttttataaataatccag

Basic information

species Glycine max
transcript GLYMA19G42340.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g21510.1 (Oryza sativa), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTTGTTGAGCTGgtaatctcagtcttatctatagctctac-tactgtgtatgttgcttgacctttgtgagggcttttctgtttgcaaatttgtttaagcagtgtttttttttttttttataaataatccag
|| || || |||||||| ||||| ||||||||||| |||||||| || ||||||||||| || ||||| |   || ||||||  |       |  |   | || |  |  | |  | ||         |            | |||| | ||  ||  ||| | ||  |||      ||                  
GGAGCGAACATTCTTGTTGATAACAAAGGATGCATTAAACTTGCTGATTTTGGGGCATCTAAGCAAGTGGCAAAGTTGgtaagattgaaaaaacttt--gttcaatgtgttattaaggtcaagcataatccaaagaactcatgctgtct-catcttccttttatcaaagttggacaattaa----------------

upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTTGTTGAGCTGgtaatctcagtcttatctatagctctactactgtgta--tgttgcttgacctttgtgagggcttttctgtttgcaaatttgtttaagcagtgtttttttttttttttataaataatccag
|| || ||||| ||||| ||||||||||||||||| ||  | |||||||||||||| ||||| ||||| |   || |||| |    ||    |   || | | || |   || |     ||  || | || |||   |||| |   |||  ||   || |  | ||   |||| | ||   ||               
GGAGCAAATATACTTGTTGATAATAAAGGATGCATTAAGTTAGCAGACTTTGGGGCCTCCAAGCAAGTGGAGAAGTTGgtgagt--agatggactaattgttttaatttcgtttgatcatttgttcaactatgtattggctctaaagttaaca---ttatagatgccaggtttatcttgcatt---------------

upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 6
lower sequence: AC197029.3_FGT003 (Zea mays), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTTGTTGAGCTGgtaat--------------ctcagtcttatctatagctctactactgt----gtatgttgcttgacctttgtgagggcttttctgtttgcaaatttgtttaagcagtgtttttttttttttttataaataatccag-----
|| || || |||||||||||||||||||| ||||| |||||||| || ||||||||||| || ||||| |   || ||||||               || ||| |  |||  || || ||||   |    | | |||     ||       | | ||    |  ||| ||       | |     |||  |      || |||   |||||||      
GGTGCAAACATTCTTGTAGATAATAAAGGGTGCATCAAACTTGCTGATTTTGGGGCATCTAAGCAAGTGGCAAAGTTGgtaagatcaaaataatatgcttagtgtgctcttaaggtcaactataatcgagggaagttagcaaacgggctataagactgggttagttggaagagaaacttaatttagttgatgaagcattctatgcttaatccaatgtag

upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G098828_T01 (Zea mays), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTTGTTGAGCTGgtaatctcagtcttatctatagctctactactgtgtatgttgcttgacctttgtgagggcttttctgtttgcaaatttgtttaagcagtgtttttttttttttttataaataatccag
|| || || |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || |||||||   || ||||||  |||   | ||  |    |    | |  |  | ||    ||    |  ||   |        || ||||| |||     ||| |    ||   ||  |    | | ||     
GGTGCAAACATTCTTGTTGATAATAAAGGGTGCATCAAACTTGCTGATTTTGGGGCATCTAAGCAAGTTGCAAAGTTGgtaagatcaaaataat--acgcttagtgtgcccttaaggtcaagtgtaactgatggaag--------ttagcaaacttg----ggcaataagattgggttagtcagaagagaaa----

upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTTGTTGAGCTGgtaatctcagtcttatctatagctctactactgtgtatgttgcttga------cctttgtgagggcttttctgtttgcaaatttgtttaa-gcagtgttttttttt------ttttttataaataatccag------------
||||| ||||| ||||| ||||||||||||||||| || ||||| || ||||| |||||||||||||| | |||| ||||||    |    ||   ||   | | ||||   |||| ||||  ||      |  || || |   | |  | |||   | || || ||    |   | |  ||        |||  | | | | |                 
GGGGCTAATATCCTTGTGGATAATAAAGGATGCATTAAGCTTGCTGATTTTGGTGCATCCAAACAAGTAGCTGAGTTGgtaagtcaaaaaata---atttgttttctacaaagtatattgcaggaagcattctgttctgtgtattctcttatttcttagttggtctagtataacatatccttcagagtgatttaatgtgattgacttgatttcatctctag

upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTTGTTGAGCTGgtaatctcagtcttatctatagctctactactgtgtatgttgcttgacctttgtgagggcttttctgtttgcaaatttgtttaagcagtgtttttttttttttttataaataatccag
||||| || || || || ||||||||||||||||| ||||||||||| ||||| || ||||| || ||||| |||||||||  | |  |||  ||| |   | | |   | |  |  |  ||| |  |||||||   ||||  || |   ||  | || | |        ||  ||    |               
GGGGCAAACATCCTCGTCGATAATAAAGGATGCATTAAACTTGCAGATTTTGGTGCTTCCAAGCAGGTTGTGGAGCTGgtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttt--tgctcaaaatctcgtctgattgagacattggttgccatag-------------