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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCTGGCATCTATAATACATTGTGATGAGTTCCGGAGCTTGTTTCCTACATCTACCAAAGTGAAATGTTTGAGTGATGCAGGGTTTTTCCTAGATGCgtaagttttgttttatatggcttctactggcccacaccattagcccagaaacttagatataattgattgtctgttcaatcatgtag

Basic information

species Glycine max
transcript GLYMA19G41030.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41030.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g02440.t01 (Vitis vinifera), 5'ss of exon 6
GTGGTCTGGCATCTATAATACATTGTGATGAGTTCCGGAGCTTGTTTCCTACATCTACCAAAGTGAAATGTTTGAGTGATGCAGGGTTTTTCCTAGATGCgtaagttt-------------tgttttatatggcttctactggcccaca------ccattagcccagaaacttagatataattgattgtctgttcaatcatgtag
| || ||||| |||||| ||||||| ||||||||  |    || ||||||| | |||| |||||||||||  |||||||||||||||| ||||| ||||||||| |||             |  || ||||   ||| | | |  || |       |||| ||    |||  |   | | |||    || |  |      | |||
GGGGACTGGCGTCTATACTACATTGCGATGAGTTTGGCGATTTATTTCCTAAAACTACAAAAGTGAAATGCCTGAGTGATGCAGGGTTCTTCCTTGATGCgtaattttccatccttaattattgttcatataaattcgattagtgcatagcaacttcattggcttgaaaatattattctcattatgggttttgtttggattttag

upper sequence: GLYMA19G41030.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g02440.t01 (Vitis vinifera), 5'ss of exon 18
GTGGTCTGGCATCTATAATACATTGTGATGAGTTCCGGAGCTTGTTTCCTACATCTACCAAAGTGAAATGTTTGAGTGATGCAGGGTTTTTCCTAGATGCgtaagttt-------------tgttttatatggcttctactggcccaca------ccattagcccagaaacttagatataattgattgtct-gttcaatcatgtag
| || ||||| |||||| ||||||| ||||||||  |  | || ||||||  | |||| |||||||||||  |||||||||||||||| ||||| |||| |||| |||             |  || | ||   ||| | | |  || |       |||  ||    |||  | | | | ||| |  || | |||     || |||
GGGGGCTGGCGTCTATACTACATTGCGATGAGTTTGGCGGTTTATTTCCTGAAACTACAAAAGTGAAATGCCTGAGTGATGCAGGGTTCTTCCTTGATGTgtaattttccatccttaattatcgttcaaataaattcgattagtgcatagcaacttcataggcttgaaaatattgttctcattaagggttttgtttggatat-tag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7640347|gb|AW734650.1|AW734650
EST:     ACATCTACCAAAGTGAAATGTTTGAGTGATGCAGGGTTTTTCCTAGATGC                         GGTTGACATATCTGGGGGTCACACACTGAGGAATCTGTTTGGAGGTGTAGT
genomic: ACATCTACCAAAGTGAAATGTTTGAGTGATGCAGGGTTTTTCCTAGATGCgtaagttttg ... aatcatgtagGGTTGACATATCTGGGGGTCACACACTGAGGAATCTGTTTGGAGGTGTAGT