Sequence
atgc intronic sequence ATGC exonic sequenceGTGGCTTTGACTCATGGACCTGATAATGTGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAACTTCTGCTTTGAGgtatgttagcttagtggaataaatcaatcatttttttccatttcgtaatgttggcagtatctcttaatatcatgtggatacaaataacttaagctgaaag...
Basic information
species | Glycine max |
transcript | GLYMA19G40520.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G40520.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 15
GTGGCTTTGACTCATGGACCTGATAATGTGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAACTTCTGCTTTGAGgtatgttagcttagtggaataaatcaatcatttttttccatttcgtaatgttggcagtatctcttaatatcatgtggatacaaataacttaagctgaaag--------
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GTAGCTTTGACTCATGGACCCACAAATGTCAAACCACAAATGAAGCTAACAGATGAGACCGGAGCTTTCTGCTTTGAGgtttgttga--tgcggagatgtatc------tcttgtaaatacagtagacaaaagttaatttcatcaaagaaaccaaaaaggcattgcttatttggagagttgtttct
upper sequence: GLYMA19G40520.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 14
GTGGCTTTGACTCATGGACCTGATAATGTGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAACTTCTGCTTTGAGgtatgttagcttagtggaataa-atcaatcattttttt-ccatttcgtaatgttggcagtatct--cttaatatcatgtgg-atacaaataacttaagctgaaag
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GTGGCCTTGACACATGGACCAGAGAATGTTAAACCCCAGGTGAAACAGACTGATGAAACTGGAAATTTCTGCTTTGAGgtatgtcagcctaatgctatagtatttgttgtaccttcaccttcttttagtatgagtaatgttttacttaatgccatacaccatatttggaaattaggaa-----
upper sequence: GLYMA19G40520.2 (Glycine max), 5'ss of exon 6
lower sequence: EFJ25438 (Selaginella moellendorffii), 5'ss of exon 14
------GTGGCTTTGACTCATGGACCTGATAATGTGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAACTTCTGCTTTGAGgtatgttagcttagtggaataaatcaatcatttttttccatttcgtaatgttggcagtatctcttaatatcatgtggatacaaataacttaagctgaaag
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CGGCAAGTCGCTCTGACTCATGGACCCTCTGACGTGAAGCCTCAGACCAAGCGTGTTGATGAAGATGGAAACTTCTGCTTTGAGgttcg--ggttgtccagcctggatggctaactattttgttctccacag----------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18040943|gb|BM309237.1|BM309237EST: TGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAACTTCTGCTTTGAG GTTCCTCCTGGTGAATATCGCTTGTCAGCCATTGCTGCTACTCCTGAGAAT
genomic: TGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAACTTCTGCTTTGAGgtatgttagc ... taatgtctagGTTCCTCCTGGTGAATATCGCTTGTCAGCCATTGCTGCTACTCCTGAGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGCTTTGACTCATGGACCTGATAATGTGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAACTTCTGCTTTGAGgtatgttagcttagtggaataaatcaatcatttttttccatttcgtaatgttggcagtatctcttaatatcatgtggatacaaataacttaagctgaaag
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataaa