Sequence
atgc intronic sequence ATGC exonic sequenceAGAACAACTTTCAAGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGAAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtcttgatatattctatcttagacttgttatttgcatataatttaattttgtaaggttaaattaaacttctatgtag
Basic information
species | Glycine max |
transcript | GLYMA19G40500.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G40500.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAACAACTTTCAAGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGAAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtc-ttgatatattctatcttagacttgttatttgcatataatttaattttgtaaggttaaattaaacttctatgtag------
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AAAACAACTTCAACGCCAAAGTTGCAGATTTTGGCCTAGCCAAACAAGCTCCTGAAGGCAGGGGTAATCACTTATCTACTCGTGTTATGGGCACATTTGGgtgagttgctcatatctctcgac----agttttcatatacaacc--ttaaattctgagttgcctattgaatccgcgatctgttttcag
upper sequence: GLYMA19G40500.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g01590.t01 (Vitis vinifera), 5'ss of exon 5
AGAACAACTTTCAAGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGAAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtcttgatatattctatcttagacttg--ttatttgcatataatttaattttgtaaggttaaattaaacttctatgtag
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AGAACAACTTTCATGCCAAGGTTGCTGATTTTGGCCTAGCCAAAAAGGCACCTGAAGGCAGGGCAAATTACCTGTCTACTCGTGTGATGGGCACATTTGGgtttgtcatactctctcatcttttgtccttaacttagtattacctagtttaatgtgtagtaatgttactaaattggtttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21888950|gb|BQ742163.1|BQ742163EST: GGAAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGG GTACGTAGCTCCTGAATATGCCATGACTGGGCACCTACTTGTTAAAAGTGA
genomic: GGAAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtcttg ... ttctatgtagGTACGTAGCTCCTGAATATGCCATGACTGGGCACCTACTTGTTAAAAGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAACAACTTTCAAGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGAAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGgttagtcttgatatattctatcttagacttgttatttgcatataatttaattttgtaaggttaaattaaacttctatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA