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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGACAAGTATGGACGACCTGGATTTAAGACTATACTTAGgtgagagttatggcacatgttgacttgaatcatcaacctgcttggactcttctcggagtaaaatttggtggatggcatgctggaatttattgagtataaaactccaggccaatggattgaaatttttattatggtttttgaagtttttatttgtatactgttttgttcctgttttctccag

Basic information

species Glycine max
transcript GLYMA19G39560.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39560.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G358618_T01 (Zea mays), 5'ss of exon 5
TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGACAAGTATGGACGACCTGGATTTAAGACTATACTTAGgtgagagttatggcacatgttgacttgaatcatcaacctgcttggactcttctcggagtaaaatttggtggatggcatgctggaatttattgagtataaaactccaggccaatggattgaaatttttattatggtttttgaagtttttatttgtatactgttttgttcctgttttctccag
| || || ||| | |||||||||||||||||| | |||||||| || ||||| || || ||||| || |||||| |||| || || |||||| || | ||||   ||     |  | |  |  |   |   |||      |||   | || ||      || ||||  || ||      ||  |                                                                                                 
TAAGCGTCTTTTTGTCACCTGACTTGAAACCTCTGATGGGTGGTACATACTTTCCACCGGATGATAATTATGGAAGACCAGGGTTCAAGACTGTATTGAGgtataagcagaagtgcgtagtttcagaagctatc------cttcatccctacta-----aatatttactgcatacttaccttcag------------------------------------------------------------------------------------------------

upper sequence: GLYMA19G39560.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G03200.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGACAAGTATGGACGACCTGGATTTAAGACTATACTTAGgtgagagttatggcacatgttgacttgaatcatcaacctgct-tggactcttctcggagtaaaatttggtggatggcatgctggaatttattgagtataaaactccaggccaatggattgaaatt--tttattatggtttttgaagtttttatttgtatactgttttgttcctgttttctccag
||   || || ||||||||||| || || || || ||||||||||| ||||| || ||  ||||||| ||||||||||| ||||| || ||| | |||| || ||        | | | ||  |||     |  ||     | | | ||  |   || | || |     | ||  | |||      | | | ||    ||  |||  ||| ||  || |  | ||  ||  ||   ||| |  | |||||  ||||  |   |||  |                
TGTCGGTATTCCTTTCACCTGATTTAAAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGACCAGGATTCAAAACTCTCCTTAAgtaagta----aaccctttttctcttattgtacaaaagcattctaggcttgtaatggtgcaataaaaaataga--gtatg------tatgtagaaacaaacgctcttggcgaa--gactatagttgattcgtttatgttctccatgttttc-tttgggtttggttcag----------------

upper sequence: GLYMA19G39560.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 5'ss of exon 6
TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGACAAGTATGGACGACCTGGATTTAAGACTATACTTAGgtgagagttatggcacatgttgacttgaatcatcaacctgcttggactcttctcggagtaaa-atttggtggatggcatgctggaatttattgagtataaaactccaggccaatggattgaaatttttattatggtttttgaagtttttatttgtatactgttttgttcctgttttctccag
||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||| | ||||||||||     |  |     |  |||| |||    |   |  |   | | |  |   |||  | |||   ||  ||  ||| ||  |||| |         ||||          | ||   ||||||| |  | || || |   || |   || ||  |||| || || | |          
TGAGTGTCTTCCTTTCACCTGATTTGAAACCTTTGATGGGTGGAACTTACTTTCCCCCGGATGATAAGTATGGAAGACCTGGGTTTAAGACTGTTCTTAGgtgaggacattttcgtccctaaactttaatttctatggttttgaaattttagtgacagtggatattccttgattgttatg-tgagatttgt---------aactttgta-----gaatgtcaatttttgtgtttgtcttggccattctc--ttatac-ctgtattctttcag----------