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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGgttagttctaacaggactattttttagcattttttctcttaatccttgcagtctttcttctgcatagttatgccttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcataagttcttgataagatatgtgtgatgctaatcattttctcttgatag

Basic information

species Glycine max
transcript GLYMA19G39300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39300.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G03110.1 (Arabidopsis thaliana), 5'ss of exon 6
CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGgttagttctaacaggactattttttagcattttttctcttaatccttgcagtctttcttctgcatagttatgccttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcataagttcttgataagatatgtgtgatgctaatcattttctcttgatag
 ||     |     ||    |   |||| |     | |  ||| |||||||||| || |||||| ||||||| || || ||||||||||||| |||||| || ||  | |  | | ||| |  |  |      ||   | || |  |  |   ||| |  |    | |     |||  ||  |  ||   || | |||   | |  ||                                                               
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag--caagaaagcctaatactccg------ttagttcaagctgtataagatttgtctttatcaat-----cttgtaactaataaaattttcgtttccatttccatag-------------------------------------------------------------

upper sequence: GLYMA19G39300.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGgttagttctaacaggactattttttagcattttttctcttaatccttgcagtctttcttctgcatagttatgccttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcataagttcttgataagatatgtgtgatgctaatcattttctcttgatag
 ||     |     ||    |   |||| |     | |  ||| |||||||||| || |||||| ||||||| || || ||||||||||||| |||||| || ||  | |  | | ||| |  |  |      ||   | || |  |  |   ||| |  |    | |     |||  ||  |  ||   || | |||   | |  ||   ||                                                          
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag--caagaaagcctaatactccg------ttagttcaagctgtataagatttgtctttatcaat-----cttgtaactaataaaattttcgtttccatttccatagcag----------------------------------------------------------

upper sequence: GLYMA19G39300.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G03457.2 (Arabidopsis thaliana), 5'ss of exon 6
---CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGgttagttctaacaggactattttttagcattttttctctta-atccttgcagtctttc----ttctgcatagttatgccttccaat--cagaaaccattgcatttgtgtattaatgttagtttccatgcataagttcttgataagatatgtgtgatgctaatcattttctcttgatag
    |||   ||| ||||  |       ||| | ||  |||  || ||||||||||| || |||||||||||||||||||| || ||||||||||  ||||| || ||||||         || |  | | |||     | ||  |  | ||  || |        | |  | | |  ||  ||    |  ||  |    ||  |||||    ||||   |  | || ||  | |                                              
AGTTCAA---TCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATgtaagttcttgttttctcatctacttggattgaactttttggactcatgaggtttgaaaaagctgtagagattggtgtattttggttgcaagactttttttatttgatccttaaaacttttctctata-acag---------------------------------------------

upper sequence: GLYMA19G39300.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
CCAAGCTTCTAATGTACCACATACTGATTCT---CAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGgttagttctaacagg-actattttttagcattttttctcttaatccttgcagtctttcttctgcatagttatgccttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcataagttcttgataagatatgtgtgatgctaatcattttctcttgatag
    || |||||| | |||  | |||||||    ||||| |  ||| | ||||||||||||||| |  |||||||||| || || |||||||||| |||||||||||||   |      | || | | |    || |||    ||||    ||| |  ||   |      |||    | ||      |  ||  || |  |   ||| |||                                                                
---GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgtttattactatatgcagttgtttgatataat----gcaatgctttagccaatgtgttggaacatc----ttgggacggttaccatatcgtaataa----------------------------------------------------------------