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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtatttttatcccagtttgttccaatttctggtctatcttgagctatttgctgttattctaggtcaggcaccataaattgaacattgtcttttgatttcag

Basic information

species Glycine max
transcript GLYMA19G37830.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37830.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g03690.t01 (Vitis vinifera), 5'ss of exon 6
ATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGgta-gtatttttatcccagtttgttccaatttctggtctatcttgagctatttgctgttattctaggtcaggcaccataaattgaacattgtcttttgatttcag
||| |||||||||| ||||| |||||| |||||||||| ||||| ||  || | ||||||||||||||||| ||||| |||||| || |||||||||||  || |    ||   |||||| | ||  |    |  || ||| |  | | | ||    ||||  || |   |  ||             |||    |||||||
ATCTATGGGGACCCAGAAGCAGCAGATGTTGTGTTTACTTCTGGTGCGAATATAGTTGTTGTTGGAATAAATATTACCACCCAAATCAAATTCACAGgtttgtgtcaacattttagtttgcttcatatctctgaatagcttcacttgtgtactc---ttctgtgtgaaataatat----------ccttctcaaaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323165|gb|FK017391.1|FK017391
EST:     AGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAG                         ATGCTGATCTCCTTGATCTGAACGAATCCAAAGGAAAGTATGCTCCCTTCT
genomic: AGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtatttt ... ttgatttcagATGCTGATCTCCTTGATCTGAAGGAATCCAAAGGAAAGTATGCTCCCTTCT
EST: gi|192322788|gb|FK014479.1|FK014479
EST:     AGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCA-TTCACAG                         ATGCTGATCTC-TTGATCTGA-G-A-TCCAAAG-AAAGTATGCTCCCT-CT
genomic: AGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtatttt ... ttgatttcagATGCTGATCTCCTTGATCTGAAGGAATCCAAAGGAAAGTATGCTCCCTTCT