1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTTTGAAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAGgtatgtttaatctaaaaagaaaacttcagtatgttttgctccaataaattttacaattttcagccaacagaatctgtatgttatctcttttatccctcctccccctttcttggtatgattttttgtgtgcttattttattgatactag
species | Glycine max |
transcript | GLYMA19G37070.4 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAG GCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGATEST: gi|10239014|gb|BE807902.1|BE807902
genomic: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAGgtatgtttaa ... ttgatactagGCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGAT
EST: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAG GCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGATEST: gi|7284812|gb|AW597237.1|AW597237
genomic: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAGgtatgtttaa ... ttgatactagGCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGAT
EST: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAG GCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGATEST: gi|208192574|gb|GD988854.1|GD988854
genomic: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAGgtatgtttaa ... ttgatactagGCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGAT
EST: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAG GCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGATEST: gi|208284330|gb|GE086348.1|GE086348
genomic: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAGgtatgtttaa ... ttgatactagGCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGAT
EST: AACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAG GCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGATEST: gi|27426990|gb|CA938510.1|CA938510
genomic: AACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAGgtatgtttaa ... ttgatactagGCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGAT
EST: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAG GCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGAT
genomic: AAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAGgtatgtttaa ... ttgatactagGCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCAAAAGTTGACTCTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTTGAAGACAAGAGCAACAACCCTTCAGAAGATTTTCAACAGGCTTTAAAGAAGgtatgtttaatctaaaaagaaaacttcagtatgttttgctccaataaattttacaattttcagccaacagaatctgtatgttatctcttttatccctcctccccctttcttggtatgattttttgtgtgcttattttattgatactag
- - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG