Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTCTTTGTATGAACATGCCATTGCTATTGAGAAAGGAAAAGAACATTCACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttccataacatatttgcattgctgtttgctcagtattcacaatttgtatatttggtatgttctgtaacatattgcatgctatctgttcttattta...

Basic information

species Glycine max
transcript GLYMA19G35140.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35140.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g04290.t01 (Vitis vinifera), 5'ss of exon 5
CTTCTCTTTGTATGAACATGCCATTGCTATTGAGAAAGGAAAAGAACATTCACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttccataacatatttgcattgctgtttgctcagtattcacaatttgtatatttggtatgttctgtaacatattgcatgctatctgttcttattta-
||| ||||||||||| || || || || ||||| || || |||||||||||||||||||| || ||| ||||||| || ||||| || ||| ||||  ||||||||  | |   ||||||| ||| ||| |   |  ||  |        || ||  |  | | | ||   || |  | ||      |        |    
CTTTTCTTTGTATGAGCAGGCTATCGCCATTGAAAAGGGGAAAGAACATTCACAAACATTACCAATGCTGTTTGCACAGTATTCCCGTTTTCTATACCTGgtatgtcaccttctatatttgtatttctgatgcttttgttgttgatggcagt-tacatcatttctccttgcactttctccacctccccaaccaacctccca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259181|gb|BE347328.1|BE347328
EST:     CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTG                         GCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
genomic: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttcca ... ttgtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
EST: gi|21256538|gb|BQ453426.1|BQ453426
EST:     CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTG                         GCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
genomic: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttcca ... ttgtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG