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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGAAGTGATTTGGCTCCTTGGCCTGCTCGATTGACTACTCCACCTCCTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaatttaaaatcttgttcaccatttctaatatcttcaatagaatcctttcattcatcagaaggaagtagcaacataagactgctactactaactgtaac...

Basic information

species Glycine max
transcript GLYMA19G34890.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34890.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g33720.1 (Oryza sativa), 5'ss of exon 6
AAAAGGAAGTGATTTGGCTCCTTGGCCTGCTCGATTGACTACTCCACCTCCTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaatttaa----aatcttgttcaccat-ttctaatatcttcaata-gaatcctttca---ttcatca-----gaaggaagtag---caacataagactgc-tactactaactgtaac------------
    |||| ||   |||||||||||||||||||||| || ||||||||||| ||||| || ||  |  |     || |||| |  ||||| || || |  |||| || |    | | |  ||   ||| | ||| ||| |    |  | ||  |||||   || | ||     ||| |   |      |  |   || ||| ||   ||||    ||             
TGGGGGAACTGGACTGGCTCCTTGGCCTGCTCGATTAACAACTCCACCTCCCCGTCTTGCTGATTTGTATGTCACTGCTGACACATTTGAAAAAGATACAgtaagttgatcatactatctttatacatatgctactatttattgtgtggataatttcagagttaaccatgcttgaatgttatgtgtttagtaactgagtgcatatcgctaatcaaaaacttgctgtgcag

upper sequence: GLYMA19G34890.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g03630.t01 (Vitis vinifera), 5'ss of exon 5
AAAAGGAAGTGATTTGGCTCCTTGGCCTGCTCGATTGACTACTCCACCTCCTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaatttaaaatcttgt-tcaccatttctaatatcttcaatagaatcctttcattcatcagaaggaagtagcaacataagactgctactactaactgtaac---------------------
|| ||| ||||  |||||||||||||| |||||||| ||| |||| ||||||||||| || ||  ||  |||| | | ||| |||||||| | ||| | ||||||  |        | ||    ||| |     | |   |   ||  | |       || |   ||  |  || | |||    | |  |||   ||||                       
AAGAGGTAGTGGATTGGCTCCTTGGCCAGCTCGATTAACTGCTCCTCCTCCTCGTCTAGCTGATTTTGGCTATACCAGTGACATGTTTGAAAGGGATACGgtaatccatggcaaaatctctttgtttatgcatgcatacgtcacattttctgccggggcacacataaacacaaatacaaggtcacaagaacttcttgtatgattagattgatcgtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019201|gb|CX705943.1|CX705943
EST:     GGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATG                         GAAG-TTGGAAACAACGAGTTCGTAATTACTGGAGCAAGCTAGCCAGTAAG
genomic: GGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaatttaaa ... ctttgtccagGAAGTTTGGAAACAACGAGTTCGTAATTACTGGAGCAAGCTAGCCAGTAAG
EST: gi|193433021|gb|FK395715.1|FK395715
EST:     TACTGAAATGTTTTGTAGAAGGACATG                         GAAGTTTGGAAACAACGAGTTCGTAATTACTGGAGCAAGCTAGCCAGTAAG
genomic: TACTGAAATG-TTTG-AGAAGGACATGgtaatttaaa ... ctttgtccagGAAGTTTGGAAACAACGAGTTCGTAATTACTGGAGCAAGCTAGCCAGTAAG
EST: gi|9820214|gb|BE555724.1|BE555724
EST:     CTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATG                         GAAGTTTGGAAACAACGAGTTCGTAATTACTGGAGCAAGCTAGCCAGTAAG
genomic: CTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaatttaaa ... ctttgtccagGAAGTTTGGAAACAACGAGTTCGTAATTACTGGAGCAAGCTAGCCAGTAAG
EST: gi|58022379|gb|CX709120.1|CX709120
EST:     TGGCAGAAATTCACTA-TCTACTGAAATG-TTGAGAAGGACATG                         G-AGTTTGGAAACAACGAGTTCGTAATTACTGGAGCAAGCTAGCCAGTAAG
genomic: TGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaatttaaa ... ctttgtccagGAAGTTTGGAAACAACGAGTTCGTAATTACTGGAGCAAGCTAGCCAGTAAG