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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagccattagattacaactttgttttgctagcacagcactgaaccagccataaacaattaacgactcataacttgtgctctaaaatttgcag

Basic information

species Glycine max
transcript GLYMA19G34180.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193350465|gb|FK316251.1|FK316251
EST:     AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC-AAAAG-AAAAG-                         ATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
genomic: AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aaatttgcagATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193708580|gb|FK644972.1|FK644972
EST:     AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
genomic: AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aaatttgcagATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193676061|gb|FK617835.1|FK617835
EST:     AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
genomic: AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aaatttgcagATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|207758641|gb|GD728687.1|GD728687
EST:     AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAA-GAAAAAGA                         ATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
genomic: AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aaatttgcagATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193358947|gb|FK325377.1|FK325377
EST:     AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
genomic: AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aaatttgcagATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193426389|gb|FK386126.1|FK386126
EST:     AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGTTAGATATATGCGCGGATTTACCAAGACATGGCCAGGAAGACA
genomic: AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aaatttgcagATGTTGTGTTAGATATATGCGCGGATTTACC-AG-CATGGCCAGGAAGACA
EST: gi|207747882|gb|GD718977.1|GD718977
EST:     AACCATTACCAAAAAGAAAAAGA                         ATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
genomic: AACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aaatttgcagATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193363294|gb|FK325782.1|FK325782
EST:     AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC
genomic: AAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aaatttgcagATGTTGTGTTAGATATATGCGCGGATTTACCAGCATGGCCAGGAAGACATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagccattagattacaactttgttttgctagcacagcactgaaccagccataaacaattaacgactcataacttgtgctctaaaatttgcag

- - - - - -  TGAAGA
- - - - - - - - AGAGCA
- - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA