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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACAGATGTGTTCCATCTTGTTTCTGGCACGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGTTTCAGGCCATCTGAACTCATCAAGgtactggcacacaaaattattgtaaccaaatcttgttcacaaatgctataaacatatatcctactcatgactcatgactcaaaattatattatatatgtg...

Basic information

species Glycine max
transcript GLYMA19G32710.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G32710.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G06839.1 (Arabidopsis thaliana), 5'ss of exon 8
CAAAACAGATGTGTTCCATCTTGTTTCTGGCACGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGTTTCAGGCCATCTGAACTCATCAAGgtac-tggcacacaaaattat-----tgtaaccaaatcttgttcacaaatgctataaacatatatcctactcatgactcatgactcaaaattatattatatatgtg
 || || ||||| ||||| ||  |||||||  | ||||| || |||||||||||||||||| ||||||| ||||||||| | ||||| ||  |||| ||||||| |  |        ||||     | ||   | || | | |       |  |||   |  ||| ||| ||  | | |||  | || ||| ||     |      
TAAGACCGATGTCTTCCACCTCATTTCTGGAGCATGGAAAACTCCAGCTGAACGTTGCTTCTTGTGGATGGGTGGTTTCCGTCCATCGGAGATCATTAAGgtacatctcgtcttttcttatagccatatacatatatttaggtttttcgagagatatttacttattctattcgagccacatcccacacaataattagtca------

upper sequence: GLYMA19G32710.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 9
CAAAACAGATGTGTTCCATCTTGTTTCTGGCACGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGTTTCAGGCCATCTGAACTCATCAAGgtactggca----cacaaaattattgtaaccaaatcttgttcacaaatgctataaacata--tatcctactcatgactcatgactcaaaattatattatatatgtg
|||  | ||||| || ||||||||||| |||| ||||||||| || || |||||||||||||||||||| ||||||||| | ||||| ||  |||||||||||||   |    ||  | ||||     |   |   |||  | |||   |   |  | ||  |||   |      |  | |  ||| |||  |    |        
CAAGTCCGATGTCTTTCATCTTGTTTCGGGCATGTGGAAGACTCCGGCCGAACGTTGCTTCATGTGGATGGGTGGTTTCCGCCCATCAGAGGTCATCAAGgtactctaatcctcaacacattaccaatatttatatttgccctcaagcacccaagccctagttatgaaaaaataaaaccctagctccaaaacacccaact------