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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAGgtaaagatattaactacattttgttaaccaaggttttagccagacatttgctctagattttaagtttctctgcaggaaaagttgtatgttgagtttcgat...

Basic information

species Glycine max
transcript GLYMA19G32480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 6
GCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAGgtaaagatattaactacattttgttaaccaaggttttagccagacatttgctctagattttaagtttctctgcaggaaaagttgtatgttgagtttcgat-----------------------------------------------------------------------------
|||||||||||||||| |||| |||||||| || |||||||| || || || || |||||  | |||||||| || |||  |||||||   ||||  | | | |||  |   ||  || |      | |||   |     |||  | |   | |  |  |  |   |   |   ||| |  |                                                                              
GCTTTTTTGTTCAATGATTTGCTCAGATCCAAAGCTTGATTCCCATCGCTTTAAAGATATAATTGATGAGGCAATTGCTGAAGgtaaatg-attatatgc-tgttgccatataattttatcatataatattgaatacctttttctattccttttctacaatgaagcgctggcaaagtgtttagcttatcatgctaactcaatctattccctgaaacttctctaatggttaaactcctttccatttccttcccttttgtag

upper sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 6
GCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAGgtaaagatattaactacattttgttaaccaaggttttagccagacatttgctcta-gattttaagtttctctgcaggaaaagttgtatgttgagtttcgat
|||||| ||||||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||||| ||| |  ||||||| | |  ||    | || | ||        |     || || ||  | | |  ||| || ||    |||         |   ||     |    | | 
GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATTCAAGGATATTCTTGATGAGGCAATATCAGCAGgtaagggttctactagctttctttttgtttttttcccttcctgagataagttgtctgatatttagccattctattttcttggaattagtgaaaaccccta-