Sequence
atgc intronic sequence ATGC exonic sequenceGAAAGCAGTGTGGAGCGAGATGATATCAAGGAGCCTTTCAGTGAGgtaacagataattcaattgatgttgtttgaagatgattataaatttagttcatgtttgtaacttctttttctttttgtttttatgggtggggggatctat...
Basic information
species | Glycine max |
transcript | GLYMA19G31560.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G31560.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G57200.1 (Arabidopsis thaliana), 5'ss of exon 6
GAAAGCAGTGTGGAGCGAGATGATATCAAGGAGCCTTTCAGTGAGgtaacagataattcaattgatgttgtttgaagatgattataaatttagttcatgtttgtaacttctttttc----------tttttgtttttatgggtgggggga----tctat-------------------------
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GAGAGCAGCGTTGAGAGAGATGATATCAGGGAACCTTTCAGTGAGgtataaaatttatcatctgaagctattttgccaacatgagaaattgttcacatgattgtttgtttacccaccataggtacattgctatctttatagatctaaaaactactctatttgttgcacattcattttattgtag
upper sequence: GLYMA19G31560.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G41451.1 (Arabidopsis thaliana), 5'ss of exon 6
GAAAGCAGTGTGGAGCGAGATGATATCAAGGAGCCTTTCAGTGAGgtaacagataat-tcaattgatgttgtttgaagatgattataaatttagttcatgtttgtaacttc---tttttctttttgtttttatgggtggggggatctat
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GAGAGCAGCGTTGAGCGAGATGATATCAAGGAACCTTTCACTGAAgtacagaacattatcatctagagcttgctatcttgggacatatcttcatatgagttttatcatcaaaagtgtttgtttttgaacttttag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193632175|gb|FK581479.1|FK581479EST: AGCGAGATGATATCAAGGAGCCTTTCAGTGAG GTTTCAATGTTCAAGAAGAACTATGACCATCTTCCTGAGGATGTATATTTT
genomic: AGCGAGATGATATCAAGGAGCCTTTCAGTGAGgtaacagata ... gtcatcatagGTTTCAATGTTCAAGAAGAACTATGACCATCTTCCTAAGGATGTATATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAGCAGTGTGGAGCGAGATGATATCAAGGAGCCTTTCAGTGAGgtaacagataattcaattgatgttgtttgaagatgattataaatttagttcatgtttgtaacttctttttctttttgtttttatgggtggggggatctat
- - - - GTGGAG
- - - - - - - - GAGATG
- - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggggg