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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGgtaatgtttctttcattagctgtctcatgttttgcaaagctattttggctttggctgcagtgctggtgtatctatctcatttgttaaaaggcaatggatc...

Basic information

species Glycine max
transcript GLYMA19G30880.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30880.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g04210.2 (Oryza sativa), 5'ss of exon 6
AATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGgtaatgtttctttcattagctgtctcatgttttgcaaagctattttggctttggctgcagtgctggtgtatctatctcatttgttaaaaggcaatg--gatc---
|  |||  |||| |||| || ||||| || || ||   ||||||||| ||||||||||| ||||||||||| || || || || |||||||| ||||| |||| || || |    ||  || | |    ||  |||   |  ||   | ||    | || |  ||     |  |    | || | ||  |   ||   |||    
ACAATTCATCCATCAAAGGTAGCATACGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATTTCACTTGGAGACACGATTGGTGTTGGTACACCAGgtactgatttt---gttgcctttattgctttcagcatgccatttcctggttca--tacatttttgcccgtttaaaactacttttaaagtgatgataccgattttt

upper sequence: GLYMA19G30880.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g04020.1 (Oryza sativa), 5'ss of exon 7
AATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGgtaatgtttctttcattagctgtctcatgttttgcaaagctattttggctttggctgcagtgctggtgtatctatctcatttgttaaaaggcaatggatc-------
|  |||  |||| |||| || |||||||| || ||   ||||||||| ||||||||||| ||||| ||||| || || || || |||||||| ||||| |||| || || |    ||  || |      ||  |||   |  ||   | |||   |    |  | | | || ||   |   | | ||||| | |||   |       
ACAATTCATCCATCAAAGGTAGCATATGTAGCTAAGGAGCTTTATGACATGGGTTGCTCGGAGATCTCACTCGGAGACACGATTGGTGTTGGTACACCAGgtattgatttt---gttgcctttactgctttcagcatgtcatttcctggtttatata---tttttgcgcatttaaaactactttcaaaag-cgatgatacgtttttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480273|gb|BG509616.1|BG509616
EST:     GGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTG                         GTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACA
genomic: GGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGgtaatgtttc ... atatttacagGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACA