1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAGAAAGACTAAGAAATCTACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAgtatgtaactaatgcattttctgtttctaattttcatatcactttactgacatttgctactatatcctgcgtcctatctgttttatttttcacttgtttt...
species | Glycine max |
transcript | GLYMA19G29990.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAA GACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCTEST: gi|22523888|gb|BU082699.1|BU082699
genomic: TACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAgtatgtaact ... ttggttgcagGACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCT
EST: TACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAA GACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCTEST: gi|15813140|gb|BI785415.1|BI785415
genomic: TACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAgtatgtaact ... ttggttgcagGACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCT
EST: TACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAA GACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCT
genomic: TACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAgtatgtaact ... ttggttgcagGACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAAGACTAAGAAATCTACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAgtatgtaactaatgcattttctgtttctaattttcatatcactttactgacatttgctactatatcctgcgtcctatctgttttatttttcacttgtttt
- - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA