Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCTAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAGgtaattaacatttatcttttcccttaatatatgatattcttcacttaatttgagaatttatgaactgactcttgatttggattaatcaattgcttcgtac...
Basic information
species | Glycine max |
transcript | GLYMA19G29720.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G157263_T01 (Zea mays), 5'ss of exon 6
GTTGCTAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAGgtaattaacatttatcttttcccttaatatatgatattcttcacttaatttgaga-atttatgaac-tgactcttgatttggattaatcaattgcttcgtac-
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GTCACAAGGGCAATTCTTGAGAACCCAAAGGACAACACGAAAGTACACTTAATCTATGCAAATGTCACGTATGAGGATATTCTTCTGAAGgtatatgcctttt-tatgctgacagacttcattg-actcttaacctgatatcagttatatacctgtatgcaaaagggtctggttcaattgatggtgcc-tatt
upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 6
GTTGCTAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAGgtaattaacatttatcttttcccttaatatatgatattcttcacttaatttgagaatttatgaactgactcttgatttggattaatcaattgcttcgtac--------
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GTTGCTAGAGCTATATTAGAAAACCCAAAAGACAAAACGAAGGTGCACCTTATTTATGCTAACGTTACATTTGAGGACATTCTCTTGAAGgtaatt--------tgctctcccttttcaaataccttttctcgtaatatctgcacatgtgtggagttctcattctattgaaacaactgatcttttaatacatgattggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51336831|gb|CO980697.1|CO980697EST: AAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAG GAAGAGCTTGATGGTCTTGCTTCTAACTATCCAGATCGATTCAAAATATAC
genomic: AAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAGgtaattaaca ... gtatatacagGAAGAGCTTGATGGTCTTGCTTCTAACTATCCAGATCGATTCAAAATATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCTAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAGgtaattaacatttatcttttcccttaatatatgatattcttcacttaatttgagaatttatgaactgactcttgatttggattaatcaattgcttcgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG