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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcctaatttataaaattcttttgttctcaactcaggcaaacaagggacacctcaaaatatttgattattttaacaaagtacatagcacaatat...

Basic information

species Glycine max
transcript GLYMA19G28770.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28770.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 8
TAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttc-ctaatttataaaattcttttgttctcaactcaggcaaacaagggacacctcaaaatatttgattattttaacaaagtacatagcacaatat-----
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TCAAAGGTTTCAATGGGGCAGATCCAATAGATCCAAAGTCAATATTGGTTGAAGATTGTGACGTCCTCATCCCAGCAGCCCTTGGGGGTGTGATCAACAGgttcttctcaccagcatct---gttttgttgaagttcact--gttcttcttgttctttgttataatttttattgctattcagaaatta-atagatctttatcttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566634|gb|AW234275.1|AW234275
EST:     GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAG                         GGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
genomic: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcc ... acggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
EST: gi|14990362|gb|BI316035.1|BI316035
EST:     GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAG                         GGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
genomic: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcc ... acggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
EST: gi|193422603|gb|FK387640.1|FK387640
EST:     GTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAG                         GGAAAATGCTAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATC
genomic: GTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcc ... acggttgaagGGAAAATGC-AAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATC
EST: gi|37997102|gb|CF808691.1|CF808691
EST:     GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAG                         GGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA
genomic: GAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGgtgattttcc ... acggttgaagGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCA