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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGgtggcaaaggagttctggaaactgtgtcaacagttag

Basic information

species Glycine max
transcript GLYMA19G27130.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27130.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g28320.1 (Oryza sativa), 5'ss of exon 5
GGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGgtggcaaaggagttctggaaactgtgtcaacagttag---------------------------------------------------------------------------------------------------------------------------
||||||||||||||||||||| |||||||||||  |||| || ||||| |||| |||||  |  | | |  | |   |  || | |  ||                                                                                                                           
GGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGAGCATACCATCTGAGAGTTGGCTGgtaaaattaaattcacactactataatcttcttctacacagggaagtttgggtatagtcttctattctgcagttgagtacatcctataacttagtatcttctttgctacttcacag

upper sequence: GLYMA19G27130.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
GGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGgtggcaaaggagttctggaaactgtgtcaacag---ttag----------------------------------------------------------------------------------------------------------------------------------
 ||  | |||||||||||||||||||| || |||||||| || || ||||||||||| | ||||||    |||   |||||  | |    ||                                                                                                                                   
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag

upper sequence: GLYMA19G27130.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G813143_T02 (Zea mays), 5'ss of exon 5
GGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGgtggcaaaggagttctggaaactgtgtcaacagttag-----------------------------------------------------------------------------------------------------------
||||||||| |||||||| || ||||||||||| ||||| || ||||| |||| |||||  | || | | |||  |||  || |||  ||                                                                                                           
GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTTGCTGGCAGGGCAGCTGTAGAACGTGTTCCATCAGAAAGTCTATTGgtaaatgaaatttacactatcgtaataattttctacagtaatgttattgttagactatgttgtgtatgtgtgtgtggaacatggtttttaaaacggtatg

upper sequence: GLYMA19G27130.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0030g01960.t01 (Vitis vinifera), 5'ss of exon 5
GGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGgtggcaaaggagttctggaaactgtgtcaacag--ttag---------------------------------------------------------------------------------------------------
|||||||||||||||||| || |||||  | ||||||||||| || ||||||||||| |  |||||| |||||| | || |  ||   || |                                                                                                   
GGAGCTTGGCATTGGAATAGTTCCATACTGTCCTCTTGGTCGTGGATTTTTTGGTGGTAGGGGAGTTGTGGAAAGTTTGCCTGCATACTTGgtatacattttgtcattttttttgtttctgttttcttaatgcaaaatatctgaaagaaatattcttcaggaaacaaagtatattctgaatgctccattta