1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGAGGAACCACAGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTGgtaataaatgattatacaatggcttcttgtttgtttcatgaattttgcctaatgattaatccctttacatttaacttatattggcag
species | Glycine max |
transcript | GLYMA19G24250.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTG TTGGTACTTCGCTTTGCAAATCGGEST: gi|18040428|gb|BM308722.1|BM308722
genomic: AGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTGgtaataaatg ... atattggcagTTGGTACTTCGCTTTGCAAATCGG
EST: AGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTG TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACEST: gi|254338293|gb|GR849818.1|GR849818
genomic: AGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTGgtaataaatg ... atattggcagTTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGAC
EST: ATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTG TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACEST: gi|16279238|gb|BI943331.1|BI943331
genomic: ATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTGgtaataaatg ... atattggcagTTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGAC
EST: AGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTG TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGAC
genomic: AGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTGgtaataaatg ... atattggcagTTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGAGGAACCACAGATTTATCGTATTGATCACTACTTGGGAAAGGAACTAGTGCAGAACTTGgtaataaatgattatacaatggcttcttgtttgtttcatgaattttgcctaatgattaatccctttacatttaacttatattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA