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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatcaagtatactttaaatatattttatatttaattttagggttaaatatggttttagtccttgtaaaataagacaatttttggttttagtccca...

Basic information

species Glycine max
transcript GLYMA19G18340.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575654|gb|CX548629.1|CX548629
EST:     ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAG                         GCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
genomic: ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatca ... ttcttttcagGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
EST: gi|151396560|gb|EV266437.1|EV266437
EST:     ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAG                         GCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
genomic: ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatca ... ttcttttcagGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
EST: gi|254316869|gb|GR828406.1|GR828406
EST:     ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAG                         GCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
genomic: ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatca ... ttcttttcagGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
EST: gi|17518794|gb|BM187836.1|BM187836
EST:     ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAG                         GCCCGGAGGTACGGCAGGTGCGTATCCCATTAAACTGGCCACAGTACGTTT
genomic: ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatca ... ttcttttcagGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
EST: gi|8402340|gb|BE057974.1|BE057974
EST:     ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAG                         GCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
genomic: ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatca ... ttcttttcagGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
EST: gi|31311515|gb|CD396718.1|CD396718
EST:     ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAG                         GCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
genomic: ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatca ... ttcttttcagGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
EST: gi|58014794|gb|CX701536.1|CX701536
EST:     ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAG                         GCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
genomic: ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatca ... ttcttttcagGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
EST: gi|58024651|gb|CX711392.1|CX711392
EST:     ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAG                         GCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT
genomic: ATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatca ... ttcttttcagGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGgttaacatcaagtatactttaaatatattttatatttaattttagggttaaatatggttttagtccttgtaaaataagacaatttttggttttagtccca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC