1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATCCTGATTGGTTTAGCCAATGTTTTACCGAAGCATAAGTTAGTTCCAAACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattttgtaatgtagtccaacgatatgttacttttggtctgctaatagaaatccaaagatccatctttccttgtgtgtgactccattttttcccaattcttttcatgcatttctttttggtaatctgtgtgttgttactaagagattgactcttttttaatgattttgcag
species | Glycine max |
transcript | GLYMA19G06470.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCTEST: gi|13789502|gb|BG652084.1|BG652084
genomic: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCT
EST: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCTEST: gi|213607939|gb|DB983880.1|DB983880
genomic: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCT
EST: ATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTACTGCTTACAAGGATAAACCACGTTTGAAGAGTGCTEST: gi|192321512|gb|FK011770.1|FK011770
genomic: ATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCT
EST: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCTEST: gi|15203020|gb|BI425788.1|BI425788
genomic: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCT
EST: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTEST: gi|209696543|gb|BW655696.1|BW655696
genomic: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGT
EST: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTGTTGC
genomic: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCCTGATTGGTTTAGCCAATGTTTTACCGAAGCATAAGTTAGTTCCAAACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattttgtaatgtagtccaacgatatgttacttttggtctgctaatagaaatccaaagatccatctttccttgtgtgtgactccattttttcccaattcttttcatgcatttctttttggtaatctgtgtgttgttactaagagattgactcttttttaatgattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG