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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtgctttccctctgaagaaccatttattggttagagatatggatctataatgatgactttcttatcattccag

Basic information

species Glycine max
transcript GLYMA19G05360.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g31840.1 (Oryza sativa), 5'ss of exon 6
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttag--ttgtgctttccctctgaagaacc-----atttattggttagagatatggatctataatga-tgactttctta-------tcattccag-----
|||||| ||||||||||| || || ||||| || ||||| || || |||||||| || |||||| |  ||||| || |||||||||||||||| || ||||| ||  |  |||   || | | |     |     | || ||   |   | ||||     | | ||| ||| ||||          | |||| |      
AAATCCAAGCATGTATGCAAGTCAATGGTTTATCACTGTTTTCTCGTATTCCTTCCCTTTTCATCTAACTCTTAGAGTTTGGGATGTCTTCCTGTATGAGgtcagaatcttgcccgccatataattgttctgtttactttttatctgaggttatgagctaagattgactgattttcaaggcacaatttattctaatacat

upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g31840.4 (Oryza sativa), 5'ss of exon 6
----------------------------------------------------------------------------------------AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttag--ttgtgctttccctctgaagaaccatttattggttagagatatggatctataatgatgactttcttatcattccag
                                                                                        |||||| ||||||||||| || || ||||| || ||||| || || |||||||| || |||||| |  ||||| || |||||||||||||||| || ||||| ||  |  ||                                                                      
CGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGAGCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAAATCCAAGCATgtatgcaagtcaatggtttatcactgttttctcgtattccttcccttttcatctaactcttagagtttgggatgtcttcctgtatgaggtcagaatcttg----------------------------------------------------------------------

upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 6
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtgctttccctctgaagaaccatttattggttagagatatggatctataatgat--gactttcttat---cattccag-------------------
||| || ||||||||||| || || ||||| || || || || ||||||||||| ||||||||| |  ||||| || |||||||||| || || || ||||||||   |  | |||  |   |    |||||  || |||||    || | ||    | ||  ||||||  | |   || |   |                   
AAACCCAAGCATGTATGCAAGTCAATGGTTTATCACAGTTTTCTCATATTCCTTCCCATTTCATCTAACTCTTAGAGTTTGGGATGTGTTTCTTTATGAGgttaga-atcttatcctgccatatgtgcattttgtgtttagat---tgcaccttgggttatttgacttttctttatgcactattgcttcataaatggtatagtc

upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0083g00540.t01 (Vitis vinifera), 5'ss of exon 6
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtgctttccctctgaagaaccatttattggttagagatatggatctataatgatgactttcttatcattccag---
||  |||||||||||||| || ||||||||||||||||| || ||||| || || ||||| ||||||||||||||||||||||||||||| || || ||||||||| ||       |||   | |    ||      |  |    ||   | | |  |    || || ||||   |   |   
AAGCCCTAGCATGTATGCAAGTCAGTGGTTCATAACTGTTTTCTCATACTCTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAGgttagtggtctaaaagctcattaaa----ttctccaataggcaccattattttgttttaggaacatttttattccttgggcag

upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtg----ctttccctctgaagaaccatttattggttagagatatggatctataatgatgactttcttat-cattccag----------------
|||||| |||||||||||||| || |||||||| || || |||||||| ||||| || ||    || ||||| || ||||||||||| ||| |  ||||||||  |||      ||| | |||      | ||  | ||     | | |||| |||| |    ||| |    | ||   ||  ||                
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcctctccctttcagcagctctttacacgtgttatgcatct-ttgcaatgtccagttcatgtcttgtagagaagtctggataatc

upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ27331 (Selaginella moellendorffii), 5'ss of exon 5
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtgctttccctctgaagaaccatttattggttagagatatggatctataatgatgactttcttatcattccag
||| || |||||||| || ||||||||||| || ||||| ||||| ||||||||||| || |   | |||||||| || ||||| || || || ||||||||| ||    |||||   || |   |   |||  ||   |||| |  |   ||   || |||                  
AAACCCAAGCATGTACGCCAGCCAGTGGTTTATCACTGTTTTTTCTTATTCCTTTCCGTTCCCGCTAGCTCTTCGGATATGGGACGTTTTTCTGTACGAGgtttgtatctctttcttgcttatctatttttttctga--agagttgcgaggctgctattatgttgcag------------

upper sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ35318 (Selaginella moellendorffii), 5'ss of exon 5
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTATTTTCATATTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtgctttccctctgaagaaccatttattggttagagatatggatctataatgatgactttcttatcattccag
||| || |||||||| || ||||||||||| || ||||| ||||| ||||||||||| || |   | |||||||| || ||||| || || || ||||||||| ||    |||||   || |   |   ||  |  |   ||| |  |   ||   || |||                  
AAACCCAAGCATGTACGCCAGCCAGTGGTTTATCACTGTGTTTTCTTATTCCTTTCCGTTCCCGCTAGCTCTTCGGATATGGGACGTTTTTCTGTACGAGgtttgtatctctttcttgcttatctatttttcttctgac-gagttgcgaggctgctattatgttgcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335212|gb|CO979078.1|CO979078
EST:     CCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAG                         GGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCAT
genomic: CCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtg ... atcattccagGGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCAT
EST: gi|18040193|gb|BM308487.1|BM308487
EST:     CCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAG                         GGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCAT
genomic: CCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTCCTCTACGAGgttagttgtg ... atcattccagGGTGTTAAAATTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCAT