Sequence
atgc intronic sequence ATGC exonic sequenceTATTCTAATTGGAATTTGGTTGTTCAACATCCAAATTTCGACAATCTGACCCAACTTTTCAGTTTCAACTACAAATCAATTACTCCCTACGGATCAATAAgtaagtgtggcctttcaaggacttgcaatgttagagatataaaatgctgatggttatttaacttagttgaatatagtgtgtgacaaccactccaagatta...
Basic information
species | Glycine max |
transcript | GLYMA19G04210.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G60920.1 (Arabidopsis thaliana), 5'ss of exon 6
TATTCTAATTGGAATTTGGTTGTTCAACATCCAAATTTCGACAATCTGACCCAACTTTTCAGTTTCAACTACAAATCAATTACTCCCTACGGATCAATAAgtaagtgtggcctttcaaggacttgcaatgttagagatataaaatgctgatggttatttaacttagttgaatatagtgtgtgacaaccactccaagatta
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TACACACAATGGAACCTTGTTGCTCAACATCCAAATCTCGACAACATCACTCAAATCTTCAGCTTCAACTACAAATCTCTTACTCCTTACGCTGGACTAAgtaagtacacacacacacacacacacaaagcccc---tctcttctctttatgccagcttatctcaa--agatttaacattttggttttgcag--------
upper sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 5
TATTCTAATTGGAATTTGGTTGTTCAACATCCAAATTTCGACAATCTGACCCAACTTTTCAGTTTCAACTACAAATCAATTACTCCCTACGGATCAATAAgtaagtgtggcctttcaaggacttgcaatgttagagatataaaatgctgatggttatttaacttagttgaatatagtgtgtgacaaccactccaagatta
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TACTCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAGTTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAgtaagtttc-tcattcagattctttc--tcttgttcttaagaaatgtt--tggtt-tctaa--taatataatgttttggatcata--tattgaag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151404928|gb|EV274742.1|EV274742EST: CCAACTTTTCAGTTTCAACTACAAATCAATTACTCCCTACGGATCAATAA ATGATACAGCAATGCTTTGGGGAGTTAAGTTCTACAATGATTTTCTCATGC
genomic: CCAACTTTTCAGTTTCAACTACAAATCAATTACTCCCTACGGATCAATAAgtaagtgtgg ... cttttaacagATGATACAGCAATGCTTTGGGGAGTTAAGTTCTACAATGATTTTCTCATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTCTAATTGGAATTTGGTTGTTCAACATCCAAATTTCGACAATCTGACCCAACTTTTCAGTTTCAACTACAAATCAATTACTCCCTACGGATCAATAAgtaagtgtggcctttcaaggacttgcaatgttagagatataaaatgctgatggttatttaacttagttgaatatagtgtgtgacaaccactccaagatta
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