Sequence
atgc intronic sequence ATGC exonic sequenceGATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACTATCGATTGGACCGTAGAGCTCCTTAAAACTGACACTTTACTAGCAGCAATGCATGCTAATTGgtaagactctaaacactatagttctcacacacacacaaaaaaaaaaatgtatttgtatcttattcgtagacgtaaaacaataacttatagattatatctt...
Basic information
species | Glycine max |
transcript | GLYMA19G01480.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g26290.6 (Oryza sativa), 5'ss of exon 7
GATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACTATCGATTGGACCGTAGAGCTCCTTAAAACTGACACTTTACTAGCAGCAATGCATGCTAATTGgtaagactctaaacactatagtt-ctcacacacac-acaaaaaaaaaaatgt--------atttgtatcttattcgtagacgtaaaacaataacttatagattatatctt-------------------------------------------------------------
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AATTGGTCACTTCTGCTGTTATTGCAAAGGTTCACACTATTGATTGGACTGTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgcatttatctcattttctcatatttgccgaaagaaaaaaaatataaccattgatgcgggtattacttttccaagtggaaattttatttacatctgcaaattcaaattaattaaattagtgagaatgtgtacaatttacctgatattctgattcttttgtgaag
upper sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G312997_T01 (Zea mays), 5'ss of exon 6
GATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACTATCGATTGGACCGTAGAGCTCCTTAAAACTGACACTTTACTAGCAGCAATGCATGCTAATTGgtaagactctaaacactatagttctcacacacacacaaaaaaaaaaatgtatttgtatcttattcgtagacgtaaaacaataacttatagattatatctt-------------------------------------------------------------
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GATTGGTCACTTCTGCTGTCATTGCAAAGGTTCACACTATTGATTGGACTGTGGAGCTTCTCAAGACTAAGACCATGAGAGCTGGAATGCGCGCAAATTGgtgaggatatattatctcattttctcatatttgttgaaagaaaacaattaacgctggtattacttttccaagtggaaattttatttacatctgcaaattcaaataaattaattagtgagattgtgtacaaatttacctcatattctaattcttttgtgaag
upper sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 7
GATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACTATCGATTGGACCGTAGAGCTCCTTAAAACTGACACTTTACTAGCAGCAATGCATGCTAATTGgtaagactctaaacactatagttctcacacacacacaaaaaaaaaaatgtatttgtatcttattcgtagacgtaaaacaataacttatagatt----atatctt-----------------------------
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GGCTGGTGACTTCTGCTGTAATTGCAAAAGTTCTTACCATTGATTGGACCGTGGAGCTTCTCAAAACTGATACTTTACATGCTGCAATGCGAGGCAATTGgtgaacattcttattctaaattaatctctctacttaaaacatggaattacatatatacttggcatcttgaaagaaaatgaaactgtgttgtgtcaagaaattttcatttggggttttaaaaatattgtttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17400378|gb|BM177160.1|BM177160EST: GTAGAGCTCCTTAAAACTGACACTTTACTAGCAGCAATGCATGCTAATTG GTATGGATTATTGGGGAAGACATTTAAGGATACATTTGGGCATGTTGGTGG
genomic: GTAGAGCTCCTTAAAACTGACACTTTACTAGCAGCAATGCATGCTAATTGgtaagactct ... taattttcagGTATGGATTATTGGGGAAGACATTTAAGGATACATTTGGGCATGTTGGTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACTATCGATTGGACCGTAGAGCTCCTTAAAACTGACACTTTACTAGCAGCAATGCATGCTAATTGgtaagactctaaacactatagttctcacacacacacaaaaaaaaaaatgtatttgtatcttattcgtagacgtaaaacaataacttatagattatatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa