Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGGGCCAAGAAGCAAAGGCTCCTCTGGGCCTCAACCAGTGTAAAGAATCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccatcatttttttcactttctcaatttgtttataattatgatcgggttgatcttaaagctaatattattagctttaatggacctgtttgttgtctggccttgtttgttctaaaaaacttaaaaaccaaagtttcctttgctgcatctcacatagcaataccttcttactttaca

Basic information

species Glycine max
transcript GLYMA18G53700.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G53700.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G13420.1 (Arabidopsis thaliana), 5'ss of exon 6
AGGGGGCCAAGAAGCAAAGGCTCCTCTGGGCCTCAACCAGTGTAAAGAATCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccatcatttttttcactttctcaatttgtttataattatgatcgggttgatcttaaagctaatattattagctttaatggacctgtttgttgtctggccttgtttgttctaaaaaacttaaaaaccaaagtttcctttgctgcatctcacatagcaataccttcttactttaca
  || |||||||| || || || |||||||| ||||| ||||||||||| || || || ||||||||||||||||| |||||||| || ||||| ||||||||||| |||| |||| ||    ||   || |   |      ||| | ||  |||      |||   |||||  ||| |||  |||   || || | |                                                                                  
-AGGTGCCAAGAAACAGAGACTTCTCTGGGCATCAACAAGTGTAAAGAACCCAGCTTACTCTGACACCTTATATGTCGCTCCTCTCATCGGACCTGACACTgtaagtcatctttttgtttgtgttg--aagtcaataggctgtattaacgctttgg-----aagt--atattcatagtttttgtgggtgtgatt-tag----------------------------------------------------------------------------------

upper sequence: GLYMA18G53700.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0150g00190.t01 (Vitis vinifera), 5'ss of exon 6
AGGGGGCCAAGAAGCAAAGGCTCCTCTGGGCCTCAACCAGTGTAAAGAATCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccatcatttttttcactttc---tcaatttgtttataattatgatcgggttgatcttaaagctaa-tattattagctttaatggacctgtttgttgtctggccttgtttgttctaaaaaacttaaaaaccaaagtttcctttgctgcatctcacatagcaataccttcttactttaca
  || |||||||| || ||||| || ||||| ||||||||||| ||||||||||||||  |||||||  |||||||  |||||||||||||||||||||| || |||| || | | || ||   ||   |  |||||    ||||| |  || |  |  |   |||| ||  ||  |||  ||| ||  |  |  |   |     || |     | | ||   ||  |       ||                                               
-AGGTGCCAAGAAACAGAGGCTGCTGTGGGCTTCAACCAGTGTCAAGAATCCTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttcttatattgcaacctcagttggatttggcagtaattgttgtcagcatcctaagaaagttatctaccatttacttaaacagttccataaataa---ggtccataatttactgccaacttcctttttcag----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7041883|gb|AW471777.1|AW471777
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|58017240|gb|CX703982.1|CX703982
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|254347696|gb|GR853945.1|GR853945
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|193427744|gb|FK394400.1|FK394400
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|23731256|gb|BU763740.1|BU763740
EST:     TCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGTATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|298186515|gb|HO037148.1|HO037148
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|19452834|gb|BM954244.1|BM954244
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|151398727|gb|EV268598.1|EV268598
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|58014569|gb|CX701311.1|CX701311
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGACCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|13563345|gb|BG551565.1|BG551565
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|207763155|gb|GD737824.1|GD737824
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|58018609|gb|CX705351.1|CX705351
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|14991621|gb|BI317294.1|BI317294
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGCAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|58017437|gb|CX704179.1|CX704179
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|308098810|gb|HO760651.1|HO760651
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGT
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGT
EST: gi|208048757|gb|GD844468.1|GD844468
EST:     CCTGCC--TTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|14991550|gb|BI317223.1|BI317223
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|5175583|gb|AI759916.1|AI759916
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|6726044|gb|AW310443.1|AW310443
EST:     CTTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCNGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|6846407|gb|AW348697.1|AW348697
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|254347695|gb|GR853944.1|GR853944
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|207841978|gb|GD815010.1|GD815010
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTA
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCC-GACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTA
EST: gi|58023410|gb|CX710151.1|CX710151
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|19052769|gb|BM731436.1|BM731436
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|208242597|gb|GE038795.1|GE038795
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCA
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCA
EST: gi|254318818|gb|GR830382.1|GR830382
EST:     CCTGCCTATTCTGACA-CTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|19269699|gb|BM885955.1|BM885955
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|298191275|gb|HO038754.1|HO038754
EST:     CCCGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGA
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGA
EST: gi|6502236|gb|AW203609.1|AW203609
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|192317351|gb|FK010582.1|FK010582
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCTTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|192324783|gb|FK018789.1|FK018789
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|17963912|gb|BM270655.1|BM270655
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|12772152|gb|BG237079.1|BG237079
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|26048893|gb|CA785346.1|CA785346
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
EST: gi|10255411|gb|BE823177.1|BE823177
EST:     CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACAC                         TGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC
genomic: CCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccat ... ttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGGGCCAAGAAGCAAAGGCTCCTCTGGGCCTCAACCAGTGTAAAGAATCCTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACtgtaagccatcatttttttcactttctcaatttgtttataattatgatcgggttgatcttaaagctaatattattagctttaatggacctgtttgttgtctggccttgtttgttctaaaaaacttaaaaaccaaagtttcctttgctgcatctcacatagcaataccttcttactttaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC