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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaaccactctgtttaactctaaataatgacttctttgatgaattgttggggtggttag

Basic information

species Glycine max
transcript GLYMA18G53620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G53620.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g32650.1 (Oryza sativa), 5'ss of exon 5
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaaccactctgtttaactctaaataatgactt---ctttgatgaattgttgggg---tggttag-------------------------------------
||||||||| || ||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || |||||||| ||| |||||||||||||||||  || |     || |  |||||  | ||     ||| |  || ||| ||||    || | |                                      
TGCTGCTGATTGCTGGGATGCAGAGATTGAATGCTCTTTTGGGTGGATTGAGTGTGTTGGGATTGCTGATAGGTCTGCATATGATCTGCGTGCTCACTCGgtatgcatt--acctatcattaaatgcttacgctcacttgggggacttgctgggagtttgctcattataatcaaatatatgtcccttccaaactaaatgtct

upper sequence: GLYMA18G53620.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g42560.1 (Oryza sativa), 5'ss of exon 5
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaaccactctgtttaactctaa-ataatgacttctttgatg---aattgttggggtggttag-------------------------------------
|||||||||||||||||||||||||||||||||||| |  || ||||| || ||||| |||||||||||||||||||| || |||||||| ||||| || |||| |   |    |  ||  || ||  |  |   | | |||   |  | || || |     |                                     
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCTTACGGATGGATAGAATGTGTGGGCATTGCTGACAGATCTGCGTATGATTTGCGAGCTCATTCTgtaagcctacaacatctcttgaatatttttgcacatattatgtgtagctctttggatatgctgcacttggattttgagttcctcattggttatgttgcat

upper sequence: GLYMA18G53620.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G171688_T01 (Zea mays), 5'ss of exon 5
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaaccactctgttta-actctaaataatg------acttctttgatgaattgttggggtggttag----------------------------------
||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| || ||||| || || || ||||| |||||||||   |   |   || ||||||   | ||       |||  || || |       |     ||                                    
TGCTGCTGATTGTTGGGATGCAGAGATTGAATGCTCCTATGGTTGGATTGAGTGTGTTGGAATTGCTGATAGGTCTGCCTATGACTTACGTGCCCACTCGgtatgtatagtccgtacactctaggaattgccggttgctttgttcattatacaccagtacttttgacttgatacctatacctaatattaaggaggcaaaa

upper sequence: GLYMA18G53620.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G821551_T03 (Zea mays), 5'ss of exon 5
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaaccac------tctgtttaactctaaataatg----------acttctttga---tgaattgttggggtggttag--------------------------------------------------------------------------------------------------------------------
||||||||||||||||||||| ||||| |||||||| | ||| ||||| |||||||| || |||||||| ||||||||||| ||||||   |||||| | |||| |        ||| ||| |||||| |||||           |  | ||||    |  |||| |   |  |||                                                                                                                      
TGCTGCTGACTGTTGGGATGCTGAGATAGAGTGCTCGTATGGGTGGATAGAGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACTgtaagcttattgcatctttttcactctagataatttatcagatacatatttttgtccttatattgctacagcagttgaaactgctcatctcatgttgtaactgcacttggtaaatgaattttgtatgttgtcctctgtttggtgtgcaaatatgctactaatattgccgtgattctctgcttactatctcacag

upper sequence: GLYMA18G53620.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G041797_T01 (Zea mays), 5'ss of exon 5
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaaccactctgt-ttaactctaaata----atgacttctttgatgaattgttggggtggttag--------------------------------------------------------------------------------------------------------------------------------
||||||||| ||||||||||| ||||| |||||||| | ||| ||||| |||||||| || |||||||| ||||||||||| ||||||   ||||||   |||| | | |||  |    |  | | |    || | ||    ||   ||  ||       || |                                                                                                                                
TGCTGCTGATTGTTGGGATGCTGAGATAGAGTGCTCTTATGGGTGGATAGAGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACAGTgtaagctcactgcatctttttcacacactggataatttaccagagacatatttttctcctttggatatgttgatacgtcaattgagttgctcatctcatgttgtagctgcactccctaaatgaaatttgtatcgttgttctctttttgctgtgctactaatattctcatgattgtctacttttatctcacag

upper sequence: GLYMA18G53620.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G29870.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaa-----ccactctgtttaactc----taaataatgacttctttgatgaattgttggggtggttag----------------------
|||  | || ||||||||||| || |||||||| || | |||||||||||| |||||||| ||||| || || ||||  ||||| || ||||||||||| ||||      |||  | |  ||||     ||  ||     | || |    | ||  |   || | | |                      
TGCAACCGATTGTTGGGATGCTGAAATTGAGTGTTCATATGGTTGGATTGAATGTGTTGGAATTGCAGATAGGTCTGATTACGACTTACGTGCTCACTCCgtaagaaactcaccttttacaactagatatatgtaggtgttcctatttatatttacttaagtagattgtggactctttgttgtatggcag

upper sequence: GLYMA18G53620.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G29880.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaa---ccactctgtttaactctaaata-atgacttc-tttgatgaattgttgg--ggtggttag---------------------------------------------------------------
||| || || ||||||||||| || |||||  | || | ||| |||||||| |||||||| ||||| || || ||||| ||||| || ||||||||||| ||||   || | |  ||||  ||||  |  || | ||| ||| |    | | |      || | |                                                                
TGCAGCAGATTGTTGGGATGCTGAAATTGAAAGTTCATATGGGTGGATTGAATGTGTTGGGATTGCAGATAGGTCTGCTTACGACTTACGTGCTCACTCTgtaagaacctcaccttttacttctattttcatcatttcgttttacagctagataattaatgatcaaaacccgtaagtgttcctgtttaaattcactaaagtatattgttgatcaactgttgcgcgacag

upper sequence: GLYMA18G53620.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0150g00150.t01 (Vitis vinifera), 5'ss of exon 5
TGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGgtaaccactctgtttaactctaaataatgacttctttgatgaattgt--tggggtggttag---------------------------------------
|||||| || ||||||||||| ||||||||||| || | ||||||||||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||     | ||||| ||     |        | ||  |  || ||  | |  |  |  |                                       
TGCTGCAGATTGTTGGGATGCTGAGATTGAGTGTTCTTATGGTTGGATTGAGTGTGTTGGTATTGCGGATAGATCTGCCTATGATTTGCGTGCTCATTCAgtaagtttacagtttatcttgtgttttgtgtggcattagttcatggtcatagactcatatgtggaaaaattcaagttttcttcatttcctgtaaggatat