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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGTACTTGCGATTCTTGAGAGCTGCAGGTCCTCTTACAGCAGTAGTTCTGGGAACAACTTTTGCAAAAATATTTCATCCATCATCAATTTCTTTGGtgagtatcaaatatatatagcatggtaatagtaatatgaatctgggtaaagctactaaagtaataaacaaggaatgaagttccatgtggataccatcatt...

Basic information

species Glycine max
transcript GLYMA18G52270.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 6
-AGGAAGTACTTGCGATTCTTGAGAGCTGCAGGTCCTCTTACAGCAGTAGTTCTGGGAACAACTTTTGCAAAAATATTTCATCCATCATCAATTTCTTTGGtgagtatcaaatatatatagcatggtaatag-taatatgaatctgggtaaagctactaaagtaat--aaacaaggaatgaagttccatgtggataccatcatt
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AAGGAAATATTTGCGGTTCCTTCGAGCATCAGGTCCCCTCACAGGAGTTGTCTTGGGCACTGTTTTTGTGAAAATATTTCATCCATCTTCAATTTCTGTGgtgagtataacatgaatttggctttctttgaactactgtttacttaatctaa--caatatagtgatcaaaacgctctatcagattttatgctt-cagaagagt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633381|gb|DW246744.1|DW246744
EST:     TCTGGGAACAACTTTTGCAAAAATATTTCATCCATCATCAATTTCTTTGG                         TGGGAGATATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTG
genomic: TCTGGGAACAACTTTTGCAAAAATATTTCATCCATCATCAATTTCTTTGGtgagtatcaa ... tttaattaggTGGGAGATATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTG