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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGgtgcattctcaatcagaaattatttctaattttcccatgtagattcctcttgctttgagcaatatggatgctaagcatactgcctatgataatgagccaacagtgttagaagctgcaaaatgaagtttctctaatgattggaaaatatgctattcttgcag

Basic information

species Glycine max
transcript GLYMA18G51810.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 6
GAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGgtgcattctcaatcagaaattatttctaattttcccatgtagattcctcttgctttgagcaatatggatgctaagcatactgcctatgataatgagccaacagtgttagaagctgcaaaatgaagtttctctaatgattggaaaatatgctattcttgcag
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GATGCCAGGAAGCGTTTTGACAAGGCTAGCCTTCTCTATGACCAGgtg--------acataataatgtttcta------tcatctcgctctccaatatgataatcaacttgtgctggaaccttgaaggttccattagccaattatacgtaggtgtagct-----------------------------------------------

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 6
GAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGgtgcattctcaatcagaaattatttctaattttcccatgtagattcctcttgctttgagcaatatggatgctaa-gcatactgcctatgataatgagccaacagtgttagaagctgcaaaatgaagtttctctaatgattggaaaatatgctattcttgcag
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GATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAGgtaatgcttcggc--gctatttcgtatggccgtacaa-gtagattcaaaat--cttgtataatacttattatggtagaaatgatctattgtcccattctatttac---------------------------------------------------------

upper sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 6
GAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGgtgcattctcaatcagaaattatttctaattttcccatgtagattcctcttgctttgagcaatatggat-gctaagcatactgcctatgataatgagccaacagtgttagaagctgcaaaatgaagtttctctaatgattggaaaatatgctattcttgcag
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GAAGCTCGGAAGCGCTTTGACAAGGCTAGCCTTACCTACGATCAGgtatcccttttgtcaaggatttttgttttccccactccgctgacttggtttgcactacaaaagatattttggaaagattaaaagttctcatcctgactct--------------------------------------------------------------