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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGgtaggttctttgtctataatgtagcttgagtcacataatttagtgtttattaacggaatcctattattagcccttaaattttactgtgttcagactatct...

Basic information

species Glycine max
transcript GLYMA18G51520.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51520.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 5
GTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGgtaggttctttgtctataatgtagcttgagtcacata-atttagtgtttattaacg---gaatcctattattagcccttaaattttactgtgttcagactatct
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GTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGGgtaggtaatc-atgtgtagtcttttttatctcctaaagaattaaggtgaaggtatttttgaatttttctgtgtgctctatagctttgttaaatattgatgc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193539701|gb|FK495185.1|FK495185
EST:     GCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG                         GTACATGGCACCAGAATATGCGACAAGTGGAAAACTTACTGAAAAGTCTGA
genomic: GCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGgtaggttctt ... gaattgccagGTACATGGCACCAGAATATGCGACAAGTGGAAAACTTACTGAAAAGTCTGA