1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGGTTTTGAATCGGAACTGGAATGATACTGATGTATCTGTTCTTCCAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGGttggttttgaaatgcattaatttatagctctcctattcgtgtaccatctagttctagaaagggaaagaaacatgggataagtataaaaaaactgatgcaa...
species | Glycine max |
transcript | GLYMA18G50170.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGT GGGGACGTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCCEST: gi|193673422|gb|FK614763.1|FK614763
genomic: CAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGGttggttttga ... ctaatacagtGGGGACGTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCC
EST: CAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGT GGGGACGGTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCEST: gi|13791689|gb|BG654280.1|BG654280
genomic: CAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGGttggttttga ... ctaatacagtGGGGAC-GTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGC
EST: CAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGT GGGGACGTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCC
genomic: CAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGGttggttttga ... ctaatacagtGGGGACGTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTTTTGAATCGGAACTGGAATGATACTGATGTATCTGTTCTTCCAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGGttggttttgaaatgcattaatttatagctctcctattcgtgtaccatctagttctagaaagggaaagaaacatgggataagtataaaaaaactgatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa