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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGACTTCCACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttatttttatatctttatgtgttatccctatcttccctccatttttcgctcttctgtaaactatctatggttcctgagaaatgtagttgaaaaatact...

Basic information

species Glycine max
transcript GLYMA18G49770.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G49770.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G01090.2 (Arabidopsis thaliana), 5'ss of exon 6
AATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGACTTCCACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttatttt-tatatctttatgtgttatccctatcttccctccatttttcgctcttctgtaaactatctatggttcctgagaaatgtagttgaaaaatact
| | ||||| ||||||||||| |||||||| |||||||||||||  |||||  | ||||||||||| || || ||||||||  |||||||||| ||||||||     |    |||||     | || ||  ||         |  ||  |  | |||  ||||     ||      |||     |  | ||| |       
AGTAACCATCCCTGAGATCCGGCAACACCCTTGGTTCCAAGCTCATCTTCCGAGGTATTTAGCTGTTCCTCCTCCAGATACTGTGCAACAGGCAAAAAAGgtaagcctaacgtatctactcttattttcattagagaaatctctattcccatttttcgataaag-gcgtaaaagcgctg---tcttcatttgtag------

upper sequence: GLYMA18G49770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 6
AATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGACTTCCACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttatt-----tttatatctttatgtgttatccctatcttccctccattt---ttcgctcttctgtaaactatctatggtt-cctgagaaatgtagttgaaaaatact
|||||| || |||||||| ||||| |||||||||||||||||||  ||||| || ||||| ||||| || ||||| || ||||| ||||| || ||||||||||  |     |||   |  |||| |||| ||| |   | |   | |  |   ||    | |   |  | ||  |  |  |  || |  ||  ||             
AATGACAATTCCTGAGATTCGTCAGCACCCATGGTTCCAAGCTCATCTTCCTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGgtttggtgataatttgattgcttatttgttttccatcaatgcttgcaaactggctttatgcctgcatggaatagtttggactatcttaacaacttaaaca---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731437|gb|BU763843.1|BU763843
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
EST: gi|14259831|gb|BG882739.1|BG882739
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
EST: gi|193414561|gb|FK379283.1|FK379283
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAA-TGGTGAAAA
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAA
EST: gi|207718492|gb|GD700064.1|GD700064
EST:     ATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
genomic: ATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
EST: gi|208161964|gb|GD962751.1|GD962751
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGA
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGA
EST: gi|208263578|gb|GE063376.1|GE063376
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAA
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAA
EST: gi|151395613|gb|EV265490.1|EV265490
EST:     CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAG                         ATTGATGAGGAGAACCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT
genomic: CACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGgtttattttt ... ggttttgtagATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAAT