1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGATCTGATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAGgtttgactttattgaatttgcttgtccttggtactttgaatttatagctccatgattgtcattttcttctgctcaatcattgaaagttgcttgttattat...
species | Glycine max |
transcript | GLYMA18G48620.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAG TCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTATEST: gi|207780700|gb|GD754245.1|GD754245
genomic: ATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAGgtttgacttt ... atattcatagTCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTAT
EST: TAAAGATAAGCGAAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAG TCCGTGAGCATCACTGAGTTTCTGAAGCCCGCTGAGGGGGAAGCATACTATEST: gi|120496757|gb|EH224924.1|EH224924
genomic: TAAAGATAAGCGAAAA-GAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAGgtttgacttt ... atattcatagTCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTAT
EST: ATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAG TCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTATEST: gi|10233135|gb|BE801953.1|BE801953
genomic: ATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAGgtttgacttt ... atattcatagTCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTAT
EST: ATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAG TCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTATEST: gi|193728096|gb|FK667624.1|FK667624
genomic: ATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAGgtttgacttt ... atattcatagTCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTAT
EST: TAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAAATCCAAGAAG TCCGTGAGCATCACTGAGTTTCTGAAGCCCGCTGAGGGGGAAGCATACTAT
genomic: TAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAA-TCCAAGAAGgtttgacttt ... atattcatagTCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCTGATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAGgtttgactttattgaatttgcttgtccttggtactttgaatttatagctccatgattgtcattttcttctgctcaatcattgaaagttgcttgttattat
- - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG