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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAGtaagttctctttgttaactttatgtaattctgttgcaatctatatttgatacatatatgagatttagatgggttcctctgcaatctggtaatagttacaa...

Basic information

species Glycine max
transcript GLYMA18G47240.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47240.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G01510.1 (Arabidopsis thaliana), 5'ss of exon 6
-GAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAGtaagttctctttgttaactttatgtaattctgttgcaatctatatttgatacatatatgagatttagatgggttcctctgcaatctggtaatagttacaa
 |||||||| |||||||| ||||||||||| || |||||||  |||| ||||||||||||  |  | |||||  | || || ||||| || ||  | || ||||||   || |||   |||   | || |     | |||  | |     ||| | |  || |     |    ||         | |  | |  ||| || 
GGAGTTTGTGTTTGCTAGCCATAGTTTTGACGTGTGGGAGAGTTGGAGTCTAGAAGGTTCTCTGGACGAATGTCGGCTTGTTAACTGCAGGAATTCCTCTgtaagt---ctctgtc--cttacagaaaatggcccgaaattgaaaaaccctacttcttggaaaacagaaataattt-------gtgtaatgaatgttgcag

upper sequence: GLYMA18G47240.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g02250.t01 (Vitis vinifera), 5'ss of exon 6
-GAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAGtaagttctctttgttaactttatgtaattctgttgcaatctatatttgatacatatatgagattta-gatgggttcctctgcaatctggtaatagttacaa
 || ||||||||||| ||||| || ||||||||||||||||  ||||   | |||||||| ||  ||||||| ||  |||| ||||||||||| ||||  ||||| || |||  || |||| | |      | ||||    |    || |   ||| ||     | |  ||    |  |   || | ||   |||| |    
GGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGTAGGTTGGTCAACTGTAGAAATCCATTGgtaagctc-cttgcttgacttaaagattcaatattgcctaattgggttcagttataaatcctcctaacaataaactttttatcattttgaacatagatgac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193535256|gb|FK489518.1|FK489518
EST:     AGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAG                         CTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCG
genomic: AGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAGtaagttctct ... aaataataggCTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCG
EST: gi|26058460|gb|CA801374.1|CA801374
EST:     AGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAG                         CTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCG
genomic: AGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAGtaagttctct ... aaataataggCTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCG