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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAGGCAGCAGGAATTAGGTGTCCTACGCCATATCTTCTGAGGCTACATGTTCTGGTTATGGAATTTATAGGtattacttttgttctgaatttcagaatataatctgatgactcatcatttttagaatacaattaggtgtcctacaccatatcaactgtttgtgtgtgacca...

Basic information

species Glycine max
transcript GLYMA18G46440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 6
-CTTAAGGCAGCAGGAATTAGGTGTCCTACGCCATATCTTCTGAGGCTACATGTTCTGGTTATGGAATTTATAGGtattacttttgttctga-atttcagaatataat--ctgatgactcatc-atttttagaa----tacaattaggtgtcctacaccatatcaactgtttgtgtgtgacca---------------------------------------------
  ||   ||||| |||||  | || || |  ||||  || |||||||| ||||| ||||| ||||||||||||||||  |||| |||| | | ||||   |||   ||   ||   |||  || || | || ||    || |||| ||   | |     | ||       || | ||  |  |                                             
AGTTGGAGCAGCTGGAATCCGATGCCCAAAACCATTGCTCCTGAGGCTTCATGTACTGGTGATGGAATTTATAGgtaaaacttgtgttttaacatttgtcaattggatgcttgtcaacttctctatctataaaaagggtaaaatttggatgcttgt-taacatttgtcaattctatggaattatcaataattcagtacatcttgtaattcgatttggttttccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491923|gb|EH220090.1|EH220090
EST:     CCTACGCCATATCTTCTGAGGCTACATGTTCTGGTTATGGAATTTATAGG                         AAAATCTGGTTGGGCTGCCCCTCGTCTTAAAGATGCAGCTTTATCTTTAGA
genomic: CCTACGCCATATCTTCTGAGGCTACATGTTCTGGTTATGGAATTTATAGGtattactttt ... ttctcacaggAAAATCTGGTTGGGCTGCCCCTCGTCTTAAAGATGCAGCTTTATCTTTAGA