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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTCATTCAGCCCGAGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCATTGTTGgtaatattttgaaggtcataattattagaagtgaaattgttgtcacatgatttacaattgtatattacggcattgtttaatccatgtagacaattacatttagtgggaaaaaggcttggttgttctatctctgatgatgctgcattcttgtttcttacag

Basic information

species Glycine max
transcript GLYMA18G46170.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170090|gb|HO018714.1|HO018714
EST:     AGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGACTCATTGTTG                         CGGAAGCATTTGTAGGAAAGGGGTTTT
genomic: AGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCATTGTTGgtaatatttt ... tttcttacagCGGAAGCATTTGTAGGAAAGGGGTTTT
EST: gi|192333743|gb|FK025480.1|FK025480
EST:     AGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCATTGTTG                         CGGAAGCATTTGTAGGAAAGGGGTTTTATAAAAAGAGACTTTGGCCCCATG
genomic: AGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCATTGTTGgtaatatttt ... tttcttacagCGGAAGCATTTGTAGGAAAGGGGTTTTATAAAAAGAGACTTTGGCCCCATG
EST: gi|192333742|gb|FK025479.1|FK025479
EST:     AGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCATTGTTG                         CGGAAGCATTTGTAGGAAAGGGGTTTTATAAAAAGAGACTTTGGCCCCATG
genomic: AGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCATTGTTGgtaatatttt ... tttcttacagCGGAAGCATTTGTAGGAAAGGGGTTTTATAAAAAGAGACTTTGGCCCCATG
EST: gi|192305687|gb|FG998037.1|FG998037
EST:     AGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCGTTGTTG                         CGGAAGCATTTGTAGGAAAGGGGTTTTATAAAAA
genomic: AGCAAATGCCTCTCACAATCATGGGTTAGATCCAGAACGTCTCATTGTTGgtaatatttt ... tttcttacagCGGAAGCATTTGTAGGAAAGGGGTTTTATAAAAA