Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGGAGCTTGGAAGGCTTTCTTCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgttgatccttgtgcataaattcttcaaactttctggttttggtttctttggactgtgattgccttccttttgtatgtgtattcatcacctatatatatggctgcag

Basic information

species Glycine max
transcript GLYMA18G46140.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46140.3 (Glycine max), 5'ss of exon 7
lower sequence: AT1G01820.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTGGGGAGCTTGGAAGGCTTTCTTCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgttgatccttgtgcataaattcttcaaactttctggttttggtttctttggactgtgattgccttccttttgtatgtgtattcatcacctatatatatggctgcag
 ||||||||||||| ||||| ||  ||||||| ||||||||||| |||||  |   ||||||| ||||| |  | |||                |||    ||| ||||  | |  | |     | ||| |||| ||     |   |  |  ||  | |  |   | || |  ||   |         
GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAGATAGGGAACAAGGATAAACACCAGgtac---------------gcaagctttcctcaagatattggttccctttctctatggagtgaagaagaaattttgctgatttttgagataacatcattaagcag--------

upper sequence: GLYMA18G46140.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 6
CTTGGGGAGCTTGGAAGGCTTTCTTCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgttgatccttgtgcataaattcttcaaactttctggttttggtttctttggactgtgattgccttccttttgtatgtgt-attcatcacctatatat-atggctgcag
|||||||| ||||||||||||||| |||||||||||||||||||||| || || |||   |   |||||||| | |||||||  |  |   ||  | ||   |    | |||       |||  || |||    |  |  |  | |   || || ||   | ||  ||   ||   ||| ||| |  |||
CTTGGGGAACTTGGAAGGCTTTCTGCATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtt--tactgtatgctcttatggttggtagactagaaaagttt--ttccttccttcctt--tcacttctattgtgcattgatcatctatggtcttggtattatgacaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693048|gb|AW761146.1|AW761146
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|14992012|gb|BI317685.1|BI317685
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|58019988|gb|CX706730.1|CX706730
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGACCAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|22523238|gb|BU082049.1|BU082049
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|15001018|gb|BI321832.1|BI321832
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|120530703|gb|EH258836.1|EH258836
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|7926421|gb|AW832447.1|AW832447
EST:     ATCAATGAAGAAGTTAAAGAAAGATCGTCA-GAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAGACTA
genomic: ATCAATGAAGAAGTTAGAGAAAGATC-TCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTA
EST: gi|58017723|gb|CX704465.1|CX704465
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|7796633|gb|AW782030.1|AW782030
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTTAACCAGTC
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTC
EST: gi|23052758|gb|BU577249.1|BU577249
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|7691215|gb|AW759346.1|AW759346
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|19347697|gb|BM892485.1|BM892485
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|17400319|gb|BM177101.1|BM177101
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACTATTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|58023442|gb|CX710183.1|CX710183
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|22523317|gb|BU082128.1|BU082128
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|7926211|gb|AW832237.1|AW832237
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|58023678|gb|CX710419.1|CX710419
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|58014395|gb|CX701137.1|CX701137
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGACCAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAACCAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|163921513|gb|EH039298.1|EH039298
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|15663457|gb|BI700828.1|BI700828
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|209698252|gb|BW678023.1|BW678023
EST:     CATCAATAAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|7693120|gb|AW761217.1|AW761217
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|15814527|gb|BI786802.1|BI786802
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|9564862|gb|BE474371.1|BE474371
EST:     ATCAATGAAGAAGTTAGAAGAA-GATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: ATCAATGAAGAAGTTAGA-GAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|58023559|gb|CX710300.1|CX710300
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|213607763|gb|DB959102.1|DB959102
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGT
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGT
EST: gi|7284130|gb|AW596728.1|AW596728
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCCAACTAAACAAG
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAG
EST: gi|18725662|gb|BM523624.1|BM523624
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|192332475|gb|FK024236.1|FK024236
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAATAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|151412092|gb|EV281904.1|EV281904
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|12496148|gb|BG046919.1|BG046919
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCC
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|16348826|gb|BI974421.1|BI974421
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|13481238|gb|BG510581.1|BG510581
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|7925277|gb|AW831303.1|AW831303
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|27446046|gb|CA953169.1|CA953169
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCC
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCC
EST: gi|7693089|gb|AW761187.1|AW761187
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
EST: gi|15661823|gb|BI699194.1|BI699194
EST:     CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGAT                         AATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA
genomic: CATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgtt ... atggctgcagAATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGAACTCTATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGGGGAGCTTGGAAGGCTTTCTTCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgttgatccttgtgcataaattcttcaaactttctggttttggtttctttggactgtgattgccttccttttgtatgtgtattcatcacctatatatatggctgcag

- - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC