1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCTGGGAGATTGTATATGCTAAGGATGGATCTGTGAAGGAAGTTTTAAATGTTATGCAGCTTAAGGGGCATAAGgtttaatattagcattattattttgaagttatttaaaatttagtttaagctcccaattttacatttatagacttttcaagccaaaaagtttgaagattat...
species | Glycine max |
transcript | GLYMA18G45270.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGGATCTGTGAAGGAAGTTTTAAATGTTATGCAGCTTAAGGGGCATAAG AGTGCTGTGACTTGGTTATGCTTTATGCCAAACTCTGAGCAAATAATCACTEST: gi|192295611|gb|FG990465.1|FG990465
genomic: ATGGATCTGTGAAGGAAGTTTTAAATGTTATGCAGCTTAAGGGGCATAAGgtttaatatt ... tgtgtgtcagAGTGCTGTGACTTGGTTATGCTTTATGCCAAACTCTGAGCAAATAATCACT
EST: ATGGATCTGTGAAGGAAGTTTTAAATGTTATGCAGCTTAAGGGGCATAAG AGTGCTGTGACTTGGTTATGCTTTATGCCAAACTCTGAGCAAATAATCACTEST: gi|5666729|gb|AI930765.1|AI930765
genomic: ATGGATCTGTGAAGGAAGTTTTAAATGTTATGCAGCTTAAGGGGCATAAGgtttaatatt ... tgtgtgtcagAGTGCTGTGACTTGGTTATGCTTTATGCCAAACTCTGAGCAAATAATCACT
EST: TGGATCTGTGAAAGAAGGTTTAAAATGTTATGCAGCTTAAGGGGCATAAG AGTGCTGTGACTTGGTTATGCTTTATGCCAAACTCTGAGCAAATAATCACT
genomic: TGGATCTGTGAAGGAAGTTTTAAA-TGTTATGCAGCTTAAGGGGCATAAGgtttaatatt ... tgtgtgtcagAGTGCTGTGACTTGGTTATGCTTTATGCCAAACTCTGAGCAAATAATCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGGGAGATTGTATATGCTAAGGATGGATCTGTGAAGGAAGTTTTAAATGTTATGCAGCTTAAGGGGCATAAGgtttaatattagcattattattttgaagttatttaaaatttagtttaagctcccaattttacatttatagacttttcaagccaaaaagtttgaagattat
- - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT