Sequence
atgc intronic sequence ATGC exonic sequenceCAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTGTTTACATCTTGCCTTACCACACCTATAAAGATGGCATTGCGATGgtgaagcctctcattaattcctccttactttatcctgttcagaatgtttaatatgttaaacactcataaaggtttagcattaccttatttttttaaacat...
Basic information
species | Glycine max |
transcript | GLYMA18G44210.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 5
CAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTGTTTACATCTTGCCTTACCACACCTATAAAGATGGCATTGCGATGgtgaagcctctcattaattcctccttactttatcctgttcagaatgtttaatatgttaa--acactcataaaggtttagcattaccttatttttttaaacat
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CGGCCTGTGAGGCACATCAAACTCTCCCACAGAGCGCAGAATTTCCTGCTGATGTGTTCACAGCTTGCCTCACCACACCCATCAAAATGGCACTGCACTGgttcgtccccttctca-tgtttgattgttgtagaca---tagaatttctcatgctgtatctgcatcaataatggtctatattcatgtatataaactattcag
upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 6
CAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTGTTTACATCTTGCCTTACCACACCTATAAAGATGGCATTGCGATGgtgaagcctctcattaattcctccttactttatcctgttcagaatgtttaatatgttaa--acactcataaaggtttagcattaccttatttttttaaacat
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CGGCCTGTGAGGCACATCAAACTCTCCCACAGAGCGCAGAATTTCCTGCTGATGTGTTCACAGCTTGCCTCACCACACCCATCAAAATGGCACTGCACTGgttcgtccccttctca------tgtttgattgttgtagacagaatttctcatgctgtatctgcatcaataatggtttatattcatgtatataaactattcag
upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 6
CAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTGTTTACATCTTGCCTTACCACACCTATAAAGATGGCATTGCGATGgtgaagcctctcattaattcctccttactttatcctgttcagaatgtttaatatgttaaacactcataaaggtttagcattaccttattttttta-aacat---------------------------------
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CTGCCTGTGAGGCACATCAAACTCTTCCTCAGAGTGCAGAATTTCCTGCCGATGTGTTTACAGCTTGCCTCACAACACCCATCAAAATGGCTTTGCACTGgt------tctctttctctcccctctctcttctctgtttgtgcatgcatatttgtgtggacagttccttatttcttatgctcctttttcttagcatgatgtgcttacatggggacatacctataaaccatgcag
upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 6
CAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTGTTTACATCTTGCCTTACCACACCTATAAAGATGGCATTGCGATGgtgaagcctctcat-taattcctccttactttatcctgttcagaatgtttaatatgttaaacactcataaaggtttagcattaccttatttttttaaacat
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CAGCCTGTGAAGCACATGAAACTCTTCCTCAGAGTGCTGAATTTCCTGCTGATGTGTTCACATCTTGTCTCACTACACCTATCAAGATGGCATTGAGATGgtgacacatgtcttcttgtttggtttcattttaattattagtttaagctatgtttgtaaagagaaatttactgtatctgactattacattctttattatg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6916382|gb|AW397912.1|AW397912EST: GATGTGTTTACATCTTGCCTTACCACACCTATAAAGATGGCATTGCGATG GTTTTGTACTCGTTCATTACTTCGTGAATCACTTGTTAATTCACTTATAGA
genomic: GATGTGTTTACATCTTGCCTTACCACACCTATAAAGATGGCATTGCGATGgtgaagcctc ... ttttctctagGTTTTGTACTCGTTCATTACTTCGTGAATCACTTGTTAATTCACTTATAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTGTTTACATCTTGCCTTACCACACCTATAAAGATGGCATTGCGATGgtgaagcctctcattaattcctccttactttatcctgttcagaatgtttaatatgttaaacactcataaaggtttagcattaccttatttttttaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc