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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacactttcttgcttactccttccaatttggactcaaatattggtgagcataacataaattttggtggtttatatag

Basic information

species Glycine max
transcript GLYMA18G42540.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 5
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacactttcttg-cttactccttccaatttggactcaaatattggtgagcataacataaattttggtggtttatatag
 || || || |||||||| || |||||||||||||| || ||||||||||| ||||||| |    |   | || | ||  |      |  |  ||   |||| | |  | | | |   |  | |   |     |     
TTATATACCGAGATATACATTCAGCTGGCTGGTGAAGCCTATGTGGTTGATTATAAgtaagcttccagccatgtcctatgcggatacacctttacattaatactagccaac-tgatgcatttctcactccccaaag---

upper sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g04920.1 (Oryza sativa), 5'ss of exon 6
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatg---tacactt---tcttgcttactccttccaatttggactcaaatattggtgagcataacataaattttggtggtttatatag
 ||||||||||||||||| ||||||||||| ||  | || ||||||    ||||||||| |   || |||    | |   |||  | |||  |    | |  |  | |  ||||  | |||||  |||  | |     | | ||
ATACATTCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAAgtaagcattatactcccatttcatttatactttcataaacagtcagatttttatgtgatgaaaacattgattc-gatccggcaaacag

upper sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 6
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacactttcttgcttactcctt----ccaatttgga--ctcaaatatt-------ggtgagc--ataacataaattttggtggtttatatag-
 || || |||||||| |||||||| ||| |||||||||||||||||||||||||||||||| | | |||||| ||  |  |||      ||  ||||  || |||  ||       |||||||  ||||     | ||||||  |   | |   
ATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAAgtatgcaaattttctttctggcctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924596|gb|AW830622.1|AW830622
EST:     TCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAA                         AATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTG
genomic: TCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacac ... gtttatatagAATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTG