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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGCTGAATCTGTCAAGAAAGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattaatattacaataatgaaatttcttgttgcctcatgtcttttagctttaactgacactcaactttgtttag

Basic information

species Glycine max
transcript GLYMA18G31780.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G31780.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G125052_T01 (Zea mays), 5'ss of exon 5
GAAGTTGCTGAATCTGTCAAGAAAGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattaatattacaataatgaaatttcttgt---tgc--ctcatgtcttttagctttaac---tgacactcaactttgtttag------------------------------
||||||| |||||| || ||||| ||||||||||  || |||||||| |||||||| ||||||||||| |||||||||  |||||  || |        |   |||   |||  |   |||  |  ||||||  |   |||||||  || |||| ||                               
GAAGTTGTTGAATCAGTGAAGAATGATTTTGGCAGCATTGACATACTAGTGCACTCTCTTGCTAATGGCCCAGAGgtac-aatatcgcactcgcctgtgtatatgtgtgtgcagcgggtgtggtgcagcttttgcttgtgacactgtacattgtctaaccatcttaaaaaccacatgtcattttgaag

upper sequence: GLYMA18G31780.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 7
GAAGTTGCTGAATCTGTCAAGAAAGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattaatattacaataatgaa-atttcttgttgcctca-tgtcttttagctttaactgacactcaactttgtttag-----------------------------------
||||||| |||||| || | ||| ||||||||||  || |||||||| ||||| || ||||||||||| |||||||||  |            ||   || | |   | |  |  |||  |  |||| |  |         ||||||| ||                                    
GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgac--actttgtctaaccatcttaaaaaccacctatattcattttgtgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813360|gb|BI785635.1|BI785635
EST:     ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAG                         GTCAGCAAACCATTGTCTGAGACATCTCGGAAAGGATATCTTGCTGCCCTG
genomic: ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattaatat ... ctttgtttagGTCAGCAAACCATTGTCTGAGACATCTCGGAAAGGATATCTTGCTGCCCTG