1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTAGTCCCGTATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGGtaaatgcatttgcttatattccagacattcttgtcttcattttgcctcctttctcaatgtaaatgaaattgaatttgttttgcataatgtgactgtttcagg
species | Glycine max |
transcript | GLYMA18G20800.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGG GCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACTEST: gi|208246009|gb|GE045623.1|GE045623
genomic: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGGtaaatgcatt ... ctgtttcaggGCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACT
EST: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGG GCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACTEST: gi|151393205|gb|EV263080.1|EV263080
genomic: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGGtaaatgcatt ... ctgtttcaggGCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACT
EST: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGG GCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACTEST: gi|23729021|gb|BU762587.1|BU762587
genomic: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGGtaaatgcatt ... ctgtttcaggGCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACT
EST: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGG GCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACTEST: gi|151405881|gb|EV275696.1|EV275696
genomic: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGGtaaatgcatt ... ctgtttcaggGCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACT
EST: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGG GCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACTEST: gi|151405414|gb|EV275228.1|EV275228
genomic: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGGtaaatgcatt ... ctgtttcaggGCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACT
EST: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGG GCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACT
genomic: TGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGGtaaatgcatt ... ctgtttcaggGCTGCGATTGTTTAGGCTATATCAAATACTTTGATGCGCACTTCACAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGTCCCGTATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGACGCTGGGGAAGATGGCCTGGGTAAAAATGCTCATTCTCTCAAGAAGGtaaatgcatttgcttatattccagacattcttgtcttcattttgcctcctttctcaatgtaaatgaaattgaatttgttttgcataatgtgactgtttcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG