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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTTGATGTAGCTGGAATGAAAAAGTCCAAAGCTTATCTCATCAATGGGGTTGTAATATTCATTTCTTGGCTGgtgagtcaatcgtttgaaatacatacacatatataaaatagaatgcactcacaattttatgatgtcatccaatcatggattgttgtcatgtatggtaagt...

Basic information

species Glycine max
transcript GLYMA18G14050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G14050.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0028g01000.t01 (Vitis vinifera), 5'ss of exon 6
GTATCTTGATGTAGCTGGAATGAAAAAGTCCAAAGCTTATCTCATCAATGGGGTTGTAATATTCATTTCTTGGCTGgtgagtcaa-tcgtttgaaatacatacacatatataaaatagaatgcactcacaatttta--tgatgtcatccaatcatgg-attgttgtcatgtatggtaagt---------------------------------------------------------------------
|||||||||||| ||||||||||| | ||||  ||| ||| |||| ||||||||||| || ||| || |||||||||||||| || ||  || |     ||      || ||| ||    |    | |   || |   | |  |  |   |||| |  || |    ||| | | | || |                                                                     
GTATCTTGATGTTGCTGGAATGAAGAGGTCCGGAGCATATGTCATGAATGGGGTTGTGATTTTCTTTGCTTGGCTGgtgagtaaaatcaatttactattatttgttgatttaatatcttctcttttaatttttgttgtttactttgtatgatcaagttatggaaaccatttttcgcaaatcagacatgtagcttacattattagtctttattccttgacctaattactaaaatataatgttttctgcag