1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGttcccttcactatcttatcctctcatatttactgtaggaatctgaatcttttatcacaatttggaagttttggatgttttttctccttgttggcttttac...
species | Glycine max |
transcript | GLYMA18G12830.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGG ATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGAEST: gi|58018096|gb|CX704838.1|CX704838
genomic: GAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGttcccttcac ... cactttcaggATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGA
EST: GAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGG ATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGAEST: gi|6666332|gb|AW277791.1|AW277791
genomic: GAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGttcccttcac ... cactttcaggATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGA
EST: GAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGG ATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGA
genomic: GAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGttcccttcac ... cactttcaggATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGttcccttcactatcttatcctctcatatttactgtaggaatctgaatcttttatcacaatttggaagttttggatgttttttctccttgttggcttttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc