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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGAgtaagttaaatgttgtaattcttaactatttttctcactgtaattatattgtgattgagattctttagaagttcttcaagttactaacatgatgctcact...

Basic information

species Glycine max
transcript GLYMA18G10380.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10380.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g26234.1 (Oryza sativa), 5'ss of exon 6
GTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGAgtaag-----------ttaaa-----tgttgtaattcttaactatttttctcactgtaattatattgtgattgagattctttagaagttcttcaagttactaacatgatgctcact
|| || ||| | || || || ||||| || ||||| || || |||||||||||||| |||||||||||||| | | ||||||| || |  || ||           |||||     | |||||||  |  || || ||||||  ||   || |  |||     |||||     | |||||  | | |   || ||           
GTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGGCTATAAGgtgagaatttactgatttaaacagcatattgtaataatatacaatatttctctgtggtctttttctgtagcaaagatt-----ggagttcaaccactcggtagca-----------

upper sequence: GLYMA18G10380.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20440.2 (Arabidopsis thaliana), 5'ss of exon 6
GTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGAgt----aagttaaatgttgtaattcttaa-ctatttttctcactgtaatt--atattgtgattgagattctttagaagttcttcaagttactaacatgatgctcact
|| |||||| |  | ||   ||||||||||||||| ||||||||||||||  |   ||| |||||||||||||||||||||||||| || ||    ||| ||||  || ||   ||||| || | ||| | |||     |   | | || || | |      |||  ||| ||||   || |   ||| | |     
GTCCTTCCTCATGTGAAAAGAGCTGGATACAATGCAATCCAGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGGgtcagcaagctaaac-ttctagcacttaaactttcttttttactacttcttagtctggttatagggtcagcatagctgttattca---tagtcttatgttacct---

upper sequence: GLYMA18G10380.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0090g00920.t01 (Vitis vinifera), 5'ss of exon 6
GTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGAgtaagttaaatgttgtaattcttaact-atttttctcactgtaattatattgtgattgagattctttagaagttcttcaagttactaacatgatgctcact-
|| |||||| | || || ||||||||||||||||| ||||||||||||||| ||||||| ||||| || ||||   |||| ||||| | |||  ||| ||| || |  |  ||   | || | |||     |||  ||||| || |     ||  |    |  | |   |||  |  |||||    ||||| 
GTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAAgtgggttcaatattcttctcattcttttatctatcttgtattaa--atattttggtgagatttaatcttgaaatttctgagtagcacacatgcgtatcactt