1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTGCTGGGTTCAATTTTGTCCAATATGTTACTGGTGCTTGGATGCGCATTCTTATGTGGTGGGATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAGgtagacatgttaatttctatcttttttttttttttttttttttatgttccttagtttcattttgtattacctgtagctgattcaatttagcatgtag
species | Glycine max |
transcript | GLYMA18G08030.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATTGTCAATCACAAGAAGGAACAAGTGTTTAACAAG GCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATAEST: gi|193321133|gb|FK286977.1|FK286977
genomic: GATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAGgtagacatgt ... tagcatgtagGCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATA
EST: TCTTATGTGGTGGGATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAG GCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATAEST: gi|208221173|gb|GE019499.1|GE019499
genomic: TCTTATGTGGTGGGATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAGgtagacatgt ... tagcatgtagGCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATA
EST: GATTGTCAATCACAAGAAGGAACAAGTGTTTAACAAG GCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATAEST: gi|51334704|gb|CO978570.1|CO978570
genomic: GATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAGgtagacatgt ... tagcatgtagGCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATA
EST: TCTTATGTGGTGGGATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAG GCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATA
genomic: TCTTATGTGGTGGGATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAGgtagacatgt ... tagcatgtagGCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCTGGGTTCAATTTTGTCCAATATGTTACTGGTGCTTGGATGCGCATTCTTATGTGGTGGGATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAGgtagacatgttaatttctatcttttttttttttttttttttttatgttccttagtttcattttgtattacctgtagctgattcaatttagcatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA