Sequence
atgc intronic sequence ATGC exonic sequenceATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTgtcagcattcctttgacattttctgtttcttgtggatgtaaagaaataaatttttaagtaaaactaccttaatgaggttaatttgttaaagttgcattgcag
Basic information
species | Glycine max |
transcript | GLYMA18G07280.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G163193_T02 (Zea mays), 5'ss of exon 6
ATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTgtcagcattcctttgacattttctgtttcttgtggatgtaaagaaataaat---ttttaagtaaaactaccttaatgaggttaatttgttaaagttgcattg-cag-
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ATTGATGCTGTTGCAAAAAGCCGTGATGGTCGATATCGCATTGTCAGTAATGATGAACGTGAGCAGACACTAAACCAATTGCTCACGgt----agtacagtgacctttcttatttcttgagtattcactaaattagctgcattgcaagttggg--acccagataaactttctac-ttgtatttttattggctga
upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G47060.1 (Arabidopsis thaliana), 5'ss of exon 6
ATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTgtcagcattcctttgacattttctgtttcttgtggatgtaaagaaataaatttttaagtaaaactaccttaatgaggttaatttgttaaagttgcattgcag
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ATAGATGCTGTGGCAAAAAGCCGTGATGGTAAATTCCGAATGGGGAGCAACGATGAAAGGGAGCAAACTTTAAATCAGTTGCTCACTgtaag---tctgctgtcaagcacc-tttcctgtgtaagtagcattcttgatctttccatgacccattcacatgttggaaacttttctgcag-----------
upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 6
ATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTgtcagcattcctttgacattttctgtttcttgtggatgtaaagaaataaatttttaagtaaaactaccttaatgaggttaatttgttaa-agttgcattgcag
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ATAGATGCTGTCGCGAAAAGCCGTGATGGTAAATTCAGAATGGTCAGCAATGATGAAAGGGAGCAAACCTTGAATCAATTGCTCACTgtaag------tttgtaattatgcacttttcctgcc-----agagttgctttcttgatct---ttgcattatcca--tttatatgttgggaactggtttacag
upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 6
ATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTgtcagcattcctttgacattttctgtttcttgtggatgtaaagaaataaatttttaagtaaaactaccttaatgaggttaatttg-ttaaagttgcattgcag
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ATAGATGCTGTAGCAAAAAGCCGTGATGGTAGATTTCGCATTGTTAGCAATGATGAGCGAGAGCAAACCTTGAACCAGTTGCTTACTgtaggtttctcctggaagttatctttcagcttctgaaatg-----------ttttaacca----tttccttgttagtttaatgtgattgaaattgggctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192305728|gb|FG995698.1|FG995698EST: GCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACT GAGATGGATGGGTTTGATAGCAATTCTTCAGTGATTGTTCTTGGAGCTACT
genomic: GCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTgtcagcattc ... tgcattgcagGAGATGGATGGGTTTGATAGCAATTCTTCAGTGATTGTTCTTGGAGCTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTgtcagcattcctttgacattttctgtttcttgtggatgtaaagaaataaatttttaagtaaaactaccttaatgaggttaatttgttaaagttgcattgcag
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