Sequence
atgc intronic sequence ATGC exonic sequenceCCAAGCGCTCTGAGTTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGgtatgatgtcatcaataatatcagctttacccacagtagacagcaaaactggcttgctgataatgtttatgctgtgcag
Basic information
species | Glycine max |
transcript | GLYMA18G04250.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G04250.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G13820.1 (Arabidopsis thaliana), 5'ss of exon 8
CCAAGCGCTCTGAGTTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGgtatga----tgtcatcaataatatcagctttacccacagtagacagcaaaactggct----tgctgata-atgtttatgctgtgcag
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CTAAGCGTACAGAGCTTTCACAACGCAGAACCAGGAGACCATTCTCTGTTACAGAGGTAGAAGCTCTAGTAAGCGCAGTTGAAGAAGTTGGGACTGGAAGgtaaaaagactggtttggttgatgagggttattaatacaataatttggttatgtggtcaaactaatgatagatattcttatttcacag
upper sequence: GLYMA18G04250.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G12560.1 (Arabidopsis thaliana), 5'ss of exon 7
CCAAGCGCTCTGAGTTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGgtatg-------atgtcatcaataat--atcagctttacccacagta-gacagcaaaactggcttgctgataatgtttatg-ctgtgcag----
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CTAAGCGTACTGAGCTAGCCCAGAGGAGAACTAGGAGACCCTTCTCTGTGACAGAGGTAGAAGCTCTTGTACAAGCAGTTGAGGAACTCGGGACTGGAAGgtatataacactagttctttcataactcatgtagtttggtcgtgggataatgtcaaagctcaaaagctaatggtcgatatatctgatcacacag
upper sequence: GLYMA18G04250.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g01670.t01 (Vitis vinifera), 5'ss of exon 8
CCAAGCGCTCTGAGTTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGgtatgatg-------tcatca-----------ataatatca-------gctttacccaca--gtagacagcaaaact---ggcttgctgataatg--tttatgctgtgcag---------------------------------------
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CTAATCGAGCTGACCTTGTACAGCGTCGTACTAGGAGACCTTTCTCTGTATCAGAAGTTGAAGCACTGGTTCATGCAGTTGAGGAACTTGGAACTGGAAGgtttgatgattgcctccatcacatctttcattgttatatctctgactcgtttcccccacctcacacacaacattactttgggttcaatgaagaggattttattttttgttggttggcatttggagttcccacaatctttctgctctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16996262|gb|BM085634.1|BM085634EST: ACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAG GTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
genomic: ACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGgtatgatgtc ... tgctgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAAGCGCTCTGAGTTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGACTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGgtatgatgtcatcaataatatcagctttacccacagtagacagcaaaactggcttgctgataatgtttatgctgtgcag
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